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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatttctaggataagacattacttctcatttaaattttttcgtctaatgttcctttttttttacttgatgatgatgagttatgtttatttttgatatagTATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG

Basic information

species Glycine max
transcript GLYMA03G21610.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7028891|gb|AW458674.1|AW458674
EST:     AATGTGCTATTTTGCTCAGATTTCAATGATCATTCAGACCAGTCAG                         TATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAG
genomic: AATGTGCTATTTTGCTCAGATTTCAATGATCATTCAGACCAGTCAGgtgattatta ... tttgatatagTATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAG
EST: gi|10252527|gb|BE820293.1|BE820293
EST:     AATGTGCTATTTTGCTCAGATTTCAATGATCATTCAGACCAGTCAG                         TATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAG
genomic: AATGTGCTATTTTGCTCAGATTTCAATGATCATTCAGACCAGTCAGgtgattatta ... tttgatatagTATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAG
EST: gi|9900467|gb|BE609435.1|BE609435
EST:     AATGTGCTATTTTGCTCAGATCTCAATGATCATTCAGACCAGTCAG                         TATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAG
genomic: AATGTGCTATTTTGCTCAGATTTCAATGATCATTCAGACCAGTCAGgtgattatta ... tttgatatagTATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAG
EST: gi|209723887|gb|BW675233.1|BW675233
EST:     AGAATGTGCTATTTTGCTCAGATTTCAATGATCATTCAGACCAGTCAG                         TATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAG
genomic: AGAATGTGCTATTTTGCTCAGATTTCAATGATCATTCAGACCAGTCAGgtgattatta ... tttgatatagTATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgttcctttttttttacttgatgatgatgagttatgtttatttttgatatagTATTTTGGACATTATTATCTCCTGATCAAAATGGAATTCATAACTCAGCAGAGACTTCGTTGTCATTGTCATTCAG
                                       tttattttt  CT-rich tract
                                agttatgtttattttt  TA-rich tract