1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...cttacataatgagtttatttttttttttcaaatgtaatgatgaaaataaaagtttgcactgacaaactattaaattttaagtgaatggcttttttaacagTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTGGCTCGTGCATTCTTAAAAGCACCTGCAATACT
species | Glycine max |
transcript | GLYMA02G40490.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAG TTAAGTGGTGGTGAGAAGCEST: gi|51341587|gb|CO982904.1|CO982904
genomic: TGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAGgtgatagaaa ... tttttaacagTTAAGTGGTGGTGAGAAGC
EST: TGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAG TTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTGGCTCGTGCATTCTTAAAAEST: gi|193689046|gb|FK630067.1|FK630067
genomic: TGAAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAGgtgatagaaa ... tttttaacagTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTGGCTCGTGCATTCTTAAAA
EST: AAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGGACTAAAAG TTAAGTGGTGGTGAGAAGC
genomic: AAGTTTCCCGATAAATATTCAACTGTTGTGGGAGAGCGAGGG-CTAAA-Ggtgatagaaa ... tttttaacagTTAAGTGGTGGTGAGAAGC
ataaaagtttgcactgacaaactattaaattttaagtgaatggcttttttaacagTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTGGCTCGTGCATTCTTAAAAGCACCTGCAATACT
cactgac putative branch site (score: 2)
ctttttt putative PPT
aaactattaaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttacataatgagtttatttttttttttcaaatgtaatgatgaaaataaaagtttgcactgacaaactattaaattttaagtgaatggcttttttaacagTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTGGCTCGTGCATTCTTAAAAGCACCTGCAATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgg