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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgttgatagtcaagaaaatgttccttccctggtggtgttcattcaaattttactgcatagatcaagccaggtgctcaattataaatatattttcatttcagTGATCACATAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCGAAGTGGGAACGAAAAGCAGTTTTGTTGGGATAATTTCCTTTCCCCTGCA

Basic information

species Glycine max
transcript GLYMA02G35240.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 13
-gttagttgttgatagtcaagaaaatgttccttccctggtggtgttcattcaaattttactgcatagatcaagccaggtgctcaattataaatatat-----tttcatttcagTGATCACATAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCGAAGTGGGAACGAAAAGCAGTTTTGTTGGGATAATTTCCTTTCCCCTGCA
  | |||| || |        |   |||||  | | | | |   |  |      ||| |     || ||  |    | || | |  |  || | |       ||| | | ||||||||||||||| |||||||| || |||||||||||||| || |||||  | |||||||| |||| | | || |||||||| |||||| | || ||   |
gttcagttatttaacaaagtcatgctgttctctgctttgagaattgtagaatcttttcaaaatttacattgattttgttgataaggtgaaattttccacaccttttaatgcagTGATCACATAGCACTTCTCAATGCATTTGAAGGATGGAAAGATGCAAAATGCAGTGGGAAGGAAAGGGACTTCTGTTGGGAAAATTTCTTATCACCAATA

upper sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 16
lower sequence: PP1S36_206V6.1 (Physcomitrella patens), 3'ss of exon 14
gttagttgttgatagtcaagaaaatgttccttccctggtggtgttcattcaaattt-tactgcatagatcaagccaggtgctcaattataaatatattttcatttcagTGATCACATAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCGAAGTGGGAACGAAAAGCAGTTTTGTTGGGATAATTTCCTTTCCCCTGCA
     ||||   |  ||   |  |   |       ||| | ||     | | ||    | ||      | ||     |  |  ||  || | ||| ||  | |  |||||| ||  |||| || || |||||||||||||||||| |||||||||||||    || |  ||     | ||||||||||| || ||| | ||| |    
----attgt--gtgttcggaatgaccctgaaaatatggagatgaaggataagatgaacagtgaccttttgaaattctg-acaaaaccatcactatgttg-cttcgcagTGACCATGTAGCACTGCTGAAAGCTTTTGAAGGATGGCAGGAGGCAAAGCGTGCAGGAAGAGAGCGTAATTTTTGTTGGGAGAACTTCTTGTCCTCAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttactgcatagatcaagccaggtgctcaattataaatatattttcatttcagTGATCACATAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCGAAGTGGGAACGAAAAGCAGTTTTGTTGGGATAATTTCCTTTCCCCTGCA
                                           ttttcatttc  CT-rich tract
                            tcaattataaatatat  TA-rich tract