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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatgctaaacaacttatggcttttatctctgatatttccttctacttgatattcttgatgcttactcaaaaatctccctcagAAATACATAGATTTGGCTGCATCTCTGGAGGAACTATCTCCACATGTACCACTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACT

Basic information

species Glycine max
transcript GLYMA02G32100.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G32100.1 (Glycine max), 3'ss of exon 16
lower sequence: GRMZM2G047310_T01 (Zea mays), 3'ss of exon 16
gtaaacatgctaaacaacttatggcttttatctctgatatttccttctacttgatattcttgatgcttactcaaaaatctccctcagAAATACATAGATTTGGCTGCATCTCTGGAGGAACTATCTCCACATGTACCACTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACT
    |    || ||   || |     || |  |  |  | |||||  |   || | ||||  |||| ||     |  | |||  ||||||||| | ||    ||    ||| | || || || |||||||||||||||||||||||||| |  ||||||||||| || ||||| ||||  || ||||
--gtatcaactgaagccctgaccttattcaagta-gtcagttcctgtttgctgttgttctgtatgcgtaac--gacttttccaccagAAATACGTGGAGCATGCAAATTCTATTGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317832|gb|FK010194.1|FK010194
EST:     GTCATTCTGTGGACCCAAAGGAAAAGCAAAATGCTTTTGATATCGGCCAG                         AAATACATAGATTTGGCTGCATCTCTGGAGGAACTATCTCCACATGTACCA
genomic: GTCATTCTGTGGACCCAAAGGAAAAGCAAAATGCTTTTGATATCGGCCAGgtaaacatgc ... tctccctcagAAATACATAGATTTGGCTGCATCTCTGGAGGAACTATCTCCACATGTACCA
EST: gi|192317861|gb|FK010195.1|FK010195
EST:     GTCATTCTGTGGACCCAAAGGAAAAGCAAAATGCTTTTGATATCGGCCAG                         AAATACATAGATTTGGCTGCATCTCTGGAGGAACTATCTCCACATGTACCA
genomic: GTCATTCTGTGGACCCAAAGGAAAAGCAAAATGCTTTTGATATCGGCCAGgtaaacatgc ... tctccctcagAAATACATAGATTTGGCTGCATCTCTGGAGGAACTATCTCCACATGTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgatatttccttctacttgatattcttgatgcttactcaaaaatctccctcagAAATACATAGATTTGGCTGCATCTCTGGAGGAACTATCTCCACATGTACCACTATATAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACT
                               tgcttac  putative branch site (score: 2)
                                             tctccctc  putative PPT
                  ttgatatt  TA-rich tract