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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatacacattccattcatatctatggatcaataaagctatcttcattaacagtatatttatttgatttttgctagttgctatacttagcagttgctatgctagtttgtgatccttaactttctcgtttcttcatacagGTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGCAGACGCTGTTGAATATCTCCATTCAGGCAAAAGTGTTGGGAAG

Basic information

species Glycine max
transcript GLYMA02G15070.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602767|gb|DB968937.1|DB968937
EST:     AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAG                         GTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGC
genomic: AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAGgtaagttata ... cttcatacagGTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGC
EST: gi|37997225|gb|CF808814.1|CF808814
EST:     AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAG                         GTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGCAGACGCT
genomic: AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAGgtaagttata ... cttcatacagGTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGCAGACGCT
EST: gi|4395823|gb|AI494820.1|AI494820
EST:     AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAG                         GTTGCTANTTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGC
genomic: AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAGgtaagttata ... cttcatacagGTTGCTA-TTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGC
EST: gi|4290814|gb|AI441672.1|AI441672
EST:     AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAG                         GTTGCTANTTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGC
genomic: AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAGgtaagttata ... cttcatacagGTTGCTA-TTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGC
EST: gi|6200887|gb|AW152987.1|AW152987
EST:     AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAG                         GTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGCAGACGCT
genomic: AAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAGgtaagttata ... cttcatacagGTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGCAGACGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttagcagttgctatgctagtttgtgatccttaactttctcgtttcttcatacagGTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGCAGACGCTGTTGAATATCTCCATTCAGGCAAAAGTGTTGGGAAG
                            ccttaac  putative branch site (score: 3)
                           tccttaactttctcgt  CT-rich tract
                              ttaacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttatacacattccattcatatctatggatcaataaagctatcttcattaacagtatatttatttgatttttgctagttgctatacttagcagttgctatgctagtttgtgatccttaactttctcgtttcttcatacagGTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGCAGACGCTGTTGAATATCTCCATTCAGGCAAAAGTGTTGGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT