Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgatttttcattctgaatttcatcgatatgtgcttttcatgttcgtctgtttgttctcataaaaatccgtttatatttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG

Basic information

species Glycine max
transcript GLYMA02G14210.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7028778|gb|AW458561.1|AW458561
EST:     TTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|15286735|gb|BI470626.1|BI470626
EST:     TTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|10252639|gb|BE820405.1|BE820405
EST:     TTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
EST: gi|16995635|gb|BM085007.1|BM085007
EST:     TTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTAAATGATGG                         GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC
genomic: TTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTAAATGATGGgtatgtatga ... tttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttttcatgttcgtctgtttgttctcataaaaatccgtttatatttttggcagGGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG
                                           tattttt  CT-rich tract
                            ataaaaatccgtttat  TA-rich tract