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...ggtgtacactttctgagataattttcctgtatgtacatttgaatgtaatgtataagtgcttcttagagaagacttgatcgctagcaactatttttttcagAAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGATACACTGGAGGAAGGACAAGTCAATAACTTTCCTCATGGTTTATGAAGCC
species | Glycine max |
transcript | GLYMA02G03800.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAG AAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGATEST: gi|6913751|gb|AW395281.1|AW395281
genomic: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAGgtagatggtc ... tttttttcagAAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGAT
EST: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAG AAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGATEST: gi|58021820|gb|CX708561.1|CX708561
genomic: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAGgtagatggtc ... tttttttcagAAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGAT
EST: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAG AAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGATEST: gi|21888840|gb|BQ742053.1|BQ742053
genomic: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAGgtagatggtc ... tttttttcagAAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGAT
EST: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAG AAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGAT
genomic: ATGGGTCCATAACCCAAAGTTTGAAAATTACTAATAGCCAACATGGGAAGgtagatggtc ... tttttttcagAAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGAT
taatgtataagtgcttcttagagaagacttgatcgctagcaactatttttttcagAAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGATACACTGGAGGAAGGACAAGTCAATAACTTTCCTCATGGTTTATGAAGCC
acttgat putative branch site (score: 5)
ctatttttttc putative PPT
aactatttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgtacactttctgagataattttcctgtatgtacatttgaatgtaatgtataagtgcttcttagagaagacttgatcgctagcaactatttttttcagAAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGATACACTGGAGGAAGGACAAGTCAATAACTTTCCTCATGGTTTATGAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - ctttctg
- - - - - - - - - - - tttcctg
- - - - - - - - - - - - - - -tatgtac
- - - - - - - - - - - - - - - - - - - - gaatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctagca