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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atagttgtgatatttatatgagtgaattgatcacttaatagtttttgtgtttttgtccaataaatcttggctaaatatcgaaattgaaatgattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGATTGGCTCGAATGT

Basic information

species Glycine max
transcript GLYMA02G01930.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343889|gb|CO984622.1|CO984622
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
EST: gi|13252662|gb|BG363565.1|BG363565
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
EST: gi|51336381|gb|CO980247.1|CO980247
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
EST: gi|31561807|gb|CD487645.1|CD487645
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
EST: gi|7640202|gb|AW734508.1|AW734508
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
EST: gi|192307576|gb|FG999615.1|FG999615
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCAGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
EST: gi|31458946|gb|CD400974.1|CD400974
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
EST: gi|10237782|gb|BE806670.1|BE806670
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGTGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
EST: gi|26047345|gb|CA784166.1|CA784166
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
EST: gi|51344356|gb|CO985089.1|CO985089
EST:     AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAG                         GAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGgtgatgatgc ... gattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtttttgtccaataaatcttggctaaatatcgaaattgaaatgattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGATTGGCTCGAATGT
                       ggctaaa  putative branch site (score: 3)
                          taaatatcgaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atagttgtgatatttatatgagtgaattgatcacttaatagtttttgtgtttttgtccaataaatcttggctaaatatcgaaattgaaatgattgtttagGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGATTGGCTCGAATGT

- agttgtg
- - - - - - - - - tgagtga
- - - - - - - - - - - - - - - - - - - - - ttttgtg