1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tgtgatgtttaaatgaatgaattgatcccttcttaatttgtgtttttcgtggatgtccaataaatcttggctaaatatggaaattgaaatatttgtttagGAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGACTGGCTCGTAATG
species | Glycine max |
transcript | GLYMA02G01920.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTTTTAAG GAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTTEST: gi|193666295|gb|FK611808.1|FK611808
genomic: AGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGgtgatgatgt ... atttgtttagGAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTT
EST: AGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAG GAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTTEST: gi|192310922|gb|FG998898.1|FG998898
genomic: AGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGgtgatgatgt ... atttgtttagGAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTT
EST: AGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAG GAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTTEST: gi|209717304|gb|BW659019.1|BW659019
genomic: AGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGgtgatgatgt ... atttgtttagGAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTT
EST: AGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAG GAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTT
genomic: AGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGgtgatgatgt ... atttgtttagGAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTT
ttcgtggatgtccaataaatcttggctaaatatggaaattgaaatatttgtttagGAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGACTGGCTCGTAATG
ggctaaa putative branch site (score: 3)
tttgttt putative PPT
taaatatggaaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgatgtttaaatgaatgaattgatcccttcttaatttgtgtttttcgtggatgtccaataaatcttggctaaatatggaaattgaaatatttgtttagGAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGACTGGCTCGTAATG
- tgatgtt
- - - - - - -tgaatga
- - - - - - - - - - - - -tcccttc
- - - - - - - - - - - - - - - - - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaataaa