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...atgatgatgtcaaaaggtttagtccagtgcaaaaatagaaacaaacttttaaataagtttcactttatgagctgacaatgttctgcgttctctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACCCCAGTAAGCAAGCACTTGAACATTGGGCCCAAGAAAATGGTATATCCA
species | Glycine max |
transcript | GLYMA01G43470.5 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACEST: gi|208127888|gb|GD924920.1|GD924920
genomic: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAAC
EST: TGTCGAAAACCTAGGNGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTTAEST: gi|193354695|gb|FK323347.1|FK323347
genomic: TGTCGAAAACCT-GGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTA
EST: TGTTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACEST: gi|193554869|gb|FK513130.1|FK513130
genomic: TG-TCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAAC
EST: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTNTTGAATCT ATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACEST: gi|208119453|gb|GD917386.1|GD917386
genomic: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAAC
EST: CGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACEST: gi|208076877|gb|GD877402.1|GD877402
genomic: CGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAAC
EST: CAGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCEST: gi|192295718|gb|FG990572.1|FG990572
genomic: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGC
EST: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACEST: gi|193323732|gb|FK291256.1|FK291256
genomic: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAAC
EST: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACEST: gi|120533313|gb|EH261446.1|EH261446
genomic: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAAC
EST: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCT ATATGGGTTCATGG
genomic: CTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTgtatgtcctg ... tctatttcagATATGGGTTTATGG
cttttaaataagtttcactttatgagctgacaatgttctgcgttctctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACCCCAGTAAGCAAGCACTTGAACATTGGGCCCAAGAAAATGGTATATCCA
agctgac putative branch site (score: 3)
ttctctatttc putative PPT
aaataagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgatgtcaaaaggtttagtccagtgcaaaaatagaaacaaacttttaaataagtttcactttatgagctgacaatgttctgcgttctctatttcagATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACCCCAGTAAGCAAGCACTTGAACATTGGGCCCAAGAAAATGGTATATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA