Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatacactacatcacaacttaatctgttttgtccacttttttaataagacaaattcaatatatgcattcctatgtttacctaatgtgttgaacatgtaatgttgctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGGCACAATGGCCTATTACAAGTTGCAGCTTCGTGATAGATAGAGTTGGCCA

Basic information

species Glycine max
transcript GLYMA01G02480.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31308726|gb|CD393929.1|CD393929
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|16277230|gb|BI942273.1|BI942273
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|193696079|gb|FK637547.1|FK637547
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|58024369|gb|CX711110.1|CX711110
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|31310299|gb|CD395502.1|CD395502
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|209720203|gb|BW674541.1|BW674541
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAG                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGGTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|254336792|gb|GR842971.1|GR842971
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|58021287|gb|CX708029.1|CX708029
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|193704314|gb|FK644764.1|FK644764
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|58018001|gb|CX704743.1|CX704743
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|31462999|gb|CD405027.1|CD405027
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|58022383|gb|CX709124.1|CX709124
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
EST: gi|17022026|gb|BM093060.1|BM093060
EST:     AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGAT                         GTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG
genomic: AGTTCCGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTAGATgtaagataca ... ctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgcattcctatgtttacctaatgtgttgaacatgtaatgttgctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGGCACAATGGCCTATTACAAGTTGCAGCTTCGTGATAGATAGAGTTGGCCA
                  acctaat  putative branch site (score: 3)
           tatgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagatacactacatcacaacttaatctgttttgtccacttttttaataagacaaattcaatatatgcattcctatgtttacctaatgtgttgaacatgtaatgttgctgtgtgcagGTTTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTTAGGCACAATGGCCTATTACAAGTTGCAGCTTCGTGATAGATAGAGTTGGCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT