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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttccctttattgtccaaattcaatctattctaccggtaaaagttgcagagttttttatcagatattttatgcttgattgttcttatggaccttagGAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG

Basic information

species Glycine max
transcript GLYMA20G25100.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 3'ss of exon 14
gtatgtttccctttattgtccaaattcaatctattctaccggtaaaagttgcagagttttttatcagatattttatgcttgattgttcttatggaccttagGAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG
    ||   || ||    ||| |  | | ||  || |   | ||  | |       |      |    | |  |||| |||| || | |  | |     |||||||||||||||||||||||||| || |||||||||||||| || ||  || |  | ||||||||| | |  |||| | ||
----gtaatcccttgccttccta--tgattcctttgtgttg-tatgaatcattcgatgcaactt----tctcatatggttgactgctgtgtttgcaaccagGAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCTTCATGCCAGAAATGTTACTGAAATCAGCATCCAGTGCATATAAG

upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 5
-----gtatgtttccctttattgtccaaattcaatctattct-accggt--aaaagttgca-gagttttttatcagatattttatgcttgat----tgttcttatggaccttagGAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG
        || ||       || |||||  ||| | | | ||   | ||  |||||  | | || |||||||     ||||       |||     | ||  | | |||||||||||||||||||||||||||||||| ||||||||||||||  | || ||| || |  | ||||||   |||||  ||||||||
gtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATACATTTCAG

upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 3'ss of exon 8
-----gtatgtttccctttattgtccaaattcaatctattct-accggt--aaaagttgca-gagttttttatcagatattttatgcttgat----tgttcttatggaccttagGAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG
        || ||       || |||||  ||| | | | ||   | ||  |||||  | | || |||||||     ||||       |||     | ||  | | |||||||||||||||||||||||||||||||| ||||||||||||||  | || ||| || |  | ||||||   ||||| |||||||||
gtactacttgctttttcaagttttccaatgtcactttttccttgacagtgaaaaagaagtatgaattttttaaatcctattcctcatctgacagtgtattggttttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATGCATTTCAG

upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 8
-----gtatgtttccctttattgtccaaattcaatctattctaccggtaaaa-gttgca-gagttttttatcagatattttatgcttgat----tgttcttatggaccttagGAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG
        || ||       || |||||   |  | |  |  || |  |||| |  | | ||  ||||||     || |       |||     | ||  | | |||||||||||||||||||||||||||||||| ||||||||||||||  | || ||| || |  | ||||||   ||||| |||||||||
gtactacttgctttttcaagttttccaatcactttttccttgacagtgaaaacgaagtatgaaatttttaaatcctactcctcatctgacagtgtattggttttgaccttagGAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATGCATTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgcagagttttttatcagatattttatgcttgattgttcttatggaccttagGAAGCTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG
                              gcttgat  putative branch site (score: 5)
                                       ttcttat  putative PPT
        agttttttatcagata  TA-rich tract