1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtctctaataactttctatcttgataagtactatattttgtttcttcaagtgaaatttcccttgaagtggtactaatggaactccccctccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCCTATGACACCCGCAATATATTCCAGTCACTTGATCTTGCATGGACTT
species | Glycine max |
transcript | GLYMA20G24070.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAEST: gi|21256304|gb|BQ453192.1|BQ453192
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAEST: gi|11274373|gb|BF324726.1|BF324726
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
EST: GGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAEST: gi|16276744|gb|BI942021.1|BI942021
genomic: GGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAEST: gi|37996030|gb|CF807619.1|CF807619
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAEST: gi|7925576|gb|AW831602.1|AW831602
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAA
EST: GAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAEST: gi|15001046|gb|BI321860.1|BI321860
genomic: GAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAEST: gi|193321576|gb|FK286608.1|FK286608
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
EST: TGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAEST: gi|21601974|gb|BQ612305.1|BQ612305
genomic: TGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAEST: gi|12688253|gb|BG154589.1|BG154589
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAEST: gi|19269615|gb|BM885871.1|BM885871
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGA
tgaaatttcccttgaagtggtactaatggaactccccctccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCCTATGACACCCGCAATATATTCCAGTCACTTGATCTTGCATGGACTT
tactaat putative branch site (score: 1)
ctccccctcccctttt putative PPT
ttttattaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctaataactttctatcttgataagtactatattttgtttcttcaagtgaaatttcccttgaagtggtactaatggaactccccctccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCCTATGACACCCGCAATATATTCCAGTCACTTGATCTTGCATGGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA