1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaactattgttatattaatcttaatatcttttcttgaaaaggcaatagatcttattccttttctcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTACAAGGGTTGAAAACTCTAAAAGTTGCATTTCATCATGCCACTAAGGAGG
species | Glycine max |
transcript | GLYMA20G11330.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAG ACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTAEST: gi|18690763|gb|BM519611.1|BM519611
genomic: AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattg ... tcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
EST: GTTCATTACAATCAG ACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTAEST: gi|9565153|gb|BE474662.1|BE474662
genomic: GTTCATTACAATCAGgtaactattg ... tcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
EST: AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAG ACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTAEST: gi|17153585|gb|BM143518.1|BM143518
genomic: AATACCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGgtaactattg ... tcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
EST: CTGATATGTTAGTTCATTACAATCAG ACGACGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
genomic: CTGATATGTTAGTTCATTACAATCAGgtaactattg ... tcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTA
tcttaatatcttttcttgaaaaggcaatagatcttattccttttctcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTACAAGGGTTGAAAACTCTAAAAGTTGCATTTCATCATGCCACTAAGGAGG
tcttattccttttctc CT-rich tract
atatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactattgttatattaatcttaatatcttttcttgaaaaggcaatagatcttattccttttctcaatgtcagACGTCGGATATATTATACTATGAAGTACTTGACATCCCTCTACCAGAATTACAAGGGTTGAAAACTCTAAAAGTTGCATTTCATCATGCCACTAAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG