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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttcagctgtttcaacttattgtttctacttttactgttatgtctttggtgacatttttttcattcttataaccactaaaataaaaaatttattcttggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAGAGTACCCTTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAAC

Basic information

species Glycine max
transcript GLYMA19G38150.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207737872|gb|GD717344.1|GD717344
EST:     AGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: AGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208221529|gb|GE017307.1|GE017307
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208200051|gb|GD996008.1|GD996008
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208293489|gb|GE095129.1|GE095129
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208247946|gb|GE045362.1|GE045362
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208241286|gb|GE043210.1|GE043210
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208170060|gb|GD967055.1|GD967055
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208144253|gb|GD941108.1|GD941108
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|207818052|gb|GD793065.1|GD793065
EST:     TTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|207686176|gb|GD670418.1|GD670418
EST:     TTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|6964169|gb|AW432862.1|AW432862
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208242604|gb|GE038802.1|GE038802
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|207747006|gb|GD720663.1|GD720663
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|207781324|gb|GD752685.1|GD752685
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208219738|gb|GE016664.1|GE016664
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTCGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208298758|gb|GE095065.1|GE095065
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|193731155|gb|FK664365.1|FK664365
EST:     GTAGGAACTTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: G-AGGAAC-TATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208324384|gb|GE120925.1|GE120925
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208327946|gb|GE124624.1|GE124624
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208263560|gb|GE063820.1|GE063820
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATCTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208327909|gb|GE119855.1|GE119855
EST:     CTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: CTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|207729786|gb|GD705470.1|GD705470
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208187815|gb|GD983927.1|GD983927
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|193560110|gb|FK518857.1|FK518857
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|193376651|gb|FK342316.1|FK342316
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|193732176|gb|FK667948.1|FK667948
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208294721|gb|GE093854.1|GE093854
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|207755737|gb|GD728988.1|GD728988
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|193685422|gb|FK626638.1|FK626638
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|193338022|gb|FK302529.1|FK302529
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|193565715|gb|FK524540.1|FK524540
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208156476|gb|GD957696.1|GD957696
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAGGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|207728572|gb|GD707714.1|GD707714
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208103076|gb|GD901514.1|GD901514
EST:     GGAGGAACTATCATACTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAA
genomic: GGAGGAACTATCAT-CTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTC-A
EST: gi|208083687|gb|GD884379.1|GD884379
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|208070414|gb|GD870951.1|GD870951
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|193591067|gb|FK546886.1|FK546886
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
EST: gi|207779609|gb|GD752049.1|GD752049
EST:     TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAA                         TTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG
genomic: TGGAGGAACTATCATCTGTTATATCCTCTAATGGTCATTCTATTGAAGAAgtatggttca ... ggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttttttcattcttataaccactaaaataaaaaatttattcttggtgaatcagTTTCTTGCATCTGAAGCCACTGAAGCTGGTTCAATATTTGACAATCTTCAGAGTACCCTTTCAACTCAGCAGGGTGAATTGGCACTATTTGCAAGGGAAC
                     cactaaa  putative branch site (score: 2)
     ttttcattcttataac  TA-rich tract