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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcagatatttctttcatttgtagtctgcttcaatattctgatcaattttattgatatccttggttttctgcagTGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGTATTGCTCAAGCCCCCTATGCCTCAACCTGGTCGTCCAAGCATGTCATTA

Basic information

species Glycine max
transcript GLYMA19G37570.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193408346|gb|FK371902.1|FK371902
EST:     AAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAA                         TGAACCCTGGAAACG-CCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
genomic: AAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAAgtgagtgcag ... ttttctgcagTGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
EST: gi|8285414|gb|BE022973.1|BE022973
EST:     CGTGATTTAAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAA                         TGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
genomic: CGTGATTTAAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAAgtgagtgcag ... ttttctgcagTGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
EST: gi|208075516|gb|GD877301.1|GD877301
EST:     CTTGTTGGGCCAA                         TGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
genomic: CTTGTTGGGCCAAgtgagtgcag ... ttttctgcagTGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
EST: gi|208141679|gb|GD940417.1|GD940417
EST:     ATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAA                         TGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
genomic: ATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAAgtgagtgcag ... ttttctgcagTGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
EST: gi|208301130|gb|GE098557.1|GE098557
EST:     GAGTCTTGTTGGGCCAA                         TGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT
genomic: GAGTCTTGTTGGGCCAAgtgagtgcag ... ttttctgcagTGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagtctgcttcaatattctgatcaattttattgatatccttggttttctgcagTGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGTATTGCTCAAGCCCCCTATGCCTCAACCTGGTCGTCCAAGCATGTCATTA
                              tattgat  putative branch site (score: 3)
                                             ttttctgc  putative PPT
             aatattctgatcaatt  TA-rich tract