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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgagtcacttgagacaaaatagttgacattttaaggtaatctcttgtcatatttcagatttatttacacttttatgttccatctttcaatgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAG

Basic information

species Glycine max
transcript GLYMA19G37310.3
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37310.2 (Glycine max), 3'ss of exon 15
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 13
--------------------------------------------------------tttgagtcact---tgagacaaaatagttgacattttaaggtaatctcttgtcatatttcagatttatttacacttttatgttccatctttcaatgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTT---GATCTGCTTCAG---
                                                        |   | |||     | |||| | |  ||   | | |       |||| |  | || |    | ||| |||    |||||  ||   | ||| |||| || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||| |||| ||| ||||| || |||||||||||||   |||||   | |    
gtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCTAATGCAGGGTTTGAACTTTCTTAGGGATCTCGCTTAATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407290|gb|EV277105.1|EV277105
EST:     AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAG                         CTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
genomic: AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAGgtaatactaa ... atgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
EST: gi|207688927|gb|GD672272.1|GD672272
EST:     AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAG                         CTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
genomic: AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAGgtaatactaa ... atgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
EST: gi|37995513|gb|CF807102.1|CF807102
EST:     AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAG                         CTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
genomic: AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAGgtaatactaa ... atgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcatatttcagatttatttacacttttatgttccatctttcaatgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAG
     atatttcagatttatt  TA-rich tract