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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgagtcacttgagacaaaatagttgacattttaaggtaatctcttgtcatatttcagatttatttacacttttatgttccatctttcaatgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGGTGGTC

Basic information

species Glycine max
transcript GLYMA19G37310.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37310.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 13
--------------------------------------------------------tttgagtcact---tgagacaaaatagttgacattttaaggtaatctcttgtcatatttcagatttatttacacttttatgttccatctttcaatgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTT---GATCTGCTTCAGGTGGTC
                                                        |   | |||     | |||| | |  ||   | | |       |||| |  | || |    | ||| |||    |||||  ||   | ||| |||| || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||| |||| ||| ||||| || |||||||||||||   |||||   | |  |    
gtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCAATCAATTCTAATGCAGGGTTTGAACTTTCTTAGGGATCTCGCTTAATTT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207688927|gb|GD672272.1|GD672272
EST:     AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAG                         CTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
genomic: AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAGgtaatactaa ... atgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
EST: gi|27445850|gb|CA952973.1|CA952973
EST:     AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAG                         CTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC
genomic: AAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAGgtaatactaa ... atgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcatatttcagatttatttacacttttatgttccatctttcaatgattacagCTTCCAACATACAAACGTCCAGGCACTTTGAGAGCAAAGCTTCTATATGCCATCAGTTCAAATGCCGGATTTGAACTTTCTTGATCTGCTTCAGGTGGTC
     atatttcagatttatt  TA-rich tract