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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattatatttggtatagaagtgggtgtttgtgtgttaatgtctggcgtgagttttttcatttctcacaatgtacatgtttccactatctttgtaatccatttatgcagGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCC

Basic information

species Glycine max
transcript GLYMA19G34580.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 15
lower sequence: AT2G31320.1 (Arabidopsis thaliana), 3'ss of exon 14
gtatgattatatttggtatagaagtgggtgtttg-tgtgttaatgtctggcgtgagttttttcatttctcacaatgtacatgtttccactatctttgtaatccatttatgcagGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCC
                       ||| ||    | | |||| ||  ||    |    | |||  ||| ||| ||| | |   ||  || | |||    | |  |||| | ||||| ||||||||||||||||| ||||||||| | |||||||| ||||| || |||||||| | ||||||  |||| || |||||||| || |  |||||||
-----------------------gtgagttcaagctctgtttatccct----tttcatgttttgtttatcataattttctaatt--caatttctggtcactggatttgt-cagGAGTGGAGTCTTGAGCTAGAGGAAGTTTTTGCTCTTGAAAGAGAAGGAGAGTTTGATAAATATGCTCCCCACAGAGAAAAACTTGGCAATAAGATGCTCC

upper sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 15
--------gtatgattatatttggtata--gaagtgggtgtttgtgtgt------taatgtctggcgtgagttttttcatttctcacaatgtacatgtttccactatctttgtaatcc-atttatgcagGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCC
         | |  |||||  |   |||  |||     | | ||  ||       || ||| |    |   | |||| |||| | | |||  | |    |  | | |||  ||  |   || | | ||||| |||| |||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||  | || || |||  |||||| |||||||
gtgggtctatttttttatacctaaaatactgaacatactctgtgcttgcaatgaatattgtttccattttttgtttttatttttaaaaataaaaacagatgtattttctgagttttgtgatatcttcagGATTGGACTCTTGAACTAGAAGAGGTTTTTTCGCTTGAAAGGGAAGGAGAATTTGATAAGTTTGCTTCTTATCGAGAAAAGCTTCAAAACAGGATGCTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398054|gb|EV267932.1|EV267932
EST:     TTTGTTTAATTGAGAAGTTTCTCCATAATACTCATGCCCCCACACATACG                         GACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAA
genomic: TTTGTTTAATTGAGAAGTTTCTCCATAATACTCATGCCCCCACACATACGgtatgattat ... atttatgcagGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcatttctcacaatgtacatgtttccactatctttgtaatccatttatgcagGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCC
       ttctcac  putative branch site (score: 2)
                                          tccattt  putative PPT
                                   tttgtaat  TA-rich tract