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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcattacatgcttgatagagtattgcaagagcgtgtcacttcacaaacttaatgactccattttttgtttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAATTCAAGCCACTCCCCTACAAACCAGGAAGCAGAGGTCCTGCAGAAGCAG

Basic information

species Glycine max
transcript GLYMA19G24250.3
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193324115|gb|FK288783.1|FK288783
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|7232264|gb|AW567621.1|AW567621
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|213602022|gb|DB976241.1|DB976241
EST:     AATTAAAGGTGATCAGCAGCATTTTTATT-GCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCA-TTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|192300568|gb|FG991520.1|FG991520
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|37997266|gb|CF808855.1|CF808855
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|254346861|gb|GR856583.1|GR856583
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|214005475|gb|DB985541.1|DB985541
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|254334915|gb|GR844700.1|GR844700
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|193323071|gb|FK287963.1|FK287963
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|151404199|gb|EV274009.1|EV274009
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|16280271|gb|BI943875.1|BI943875
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|254338292|gb|GR849817.1|GR849817
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|10256519|gb|BE824285.1|BE824285
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
EST: gi|37994077|gb|CF805823.1|CF805823
EST:     AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTG-CAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA
genomic: AATTAAAGGTGATCAGCAGCATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaagagcgtgtcacttcacaaacttaatgactccattttttgtttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAATTCAAGCCACTCCCCTACAAACCAGGAAGCAGAGGTCCTGCAGAAGCAG
                       acttaat  putative branch site (score: 4)
                                ctccattttttgtttc  putative PPT
                                    attttttgtttcttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagatcattacatgcttgatagagtattgcaagagcgtgtcacttcacaaacttaatgactccattttttgtttcttatcagGCATCCTGGCAGATCTTCACCCCACTTTTGCACAGAATTGATGAAGGGGAATTCAAGCCACTCCCCTACAAACCAGGAAGCAGAGGTCCTGCAGAAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC