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gtaggcatgcctttgtggcttatattttttcacggatcatgccactcagtggaaacattggcataatttctaccgcaacatttcatttcagGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATG
species | Glycine max |
transcript | GLYMA18G46340.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGG GATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATEST: gi|254318100|gb|GR832268.1|GR832268
genomic: GGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGgtaggcatgc ... ttcatttcagGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAAT
EST: GGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGG GATTGGTTTGGGGACACTTTTATCATGTGCTCGTCATATAACAGATGGAATEST: gi|6073170|gb|AW102557.1|AW102557
genomic: GGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGgtaggcatgc ... ttcatttcagGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAAT
EST: GGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGG GATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATEST: gi|254315925|gb|GR825734.1|GR825734
genomic: GGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGgtaggcatgc ... ttcatttcagGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAAT
EST: GGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGG GATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAAT
genomic: GGAGAAGTTGGCCATGTAAATCAAGCCAACAACATGTACCTGTTTCCAGGgtaggcatgc ... ttcatttcagGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAAT
tcatgccactcagtggaaacattggcataatttctaccgcaacatttcatttcagGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATG
tttcatttc CT-rich tract
ataatttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcatgcctttgtggcttatattttttcacggatcatgccactcagtggaaacattggcataatttctaccgcaacatttcatttcagGATTGGTTTGGGGACACTTTTATCAGGTGCTCGTCATATAACAGATGGAATGTTGCGAGCAGCAGCCGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG