1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttctacctaggagtaaaagttgatttactaggtgatctgtgaattgcctaacttgtcatgaagatttaattatttgtatcaattctctgtgattttcaggCTTTGGATGCTGAGACTAGGTCAAGTACCCCTAATGCCATTAATCAGCAAATGGACAAGCGTGTCAGCTCCCCGAGGAGG
species | Glycine max |
transcript | GLYMA18G42790.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CGTCTGCTACTGCTGTCTTAGACAGGCTTCTTAAATTCCTGCTTATAAGG CTTTGGATGCTGAGACTAGGTCAAGTACCCCTAATGCCATTAATCAGCAAAEST: gi|21994254|gb|BQ785782.1|BQ785782
genomic: CGTCTGCTACTGCTGTCTTAGACAGGCTTCTTAAATTCCTGCTTATAAGGtaatggcttg ... gattttcaggCTTTGGATGCTGAGACTAGGTCAAGTACCCCTAATGCCATTAATCAGCAAA
EST: CGTCTGCTACTGCTGTCTTAGACAGGCTTCTTAAATTCCTGCTTATAAGG CTTTGGATGCTGAGACTAGGTCAAGTACCCCTAATGCCATTAATCAGCAAAEST: gi|8284717|gb|BE022259.1|BE022259
genomic: CGTCTGCTACTGCTGTCTTAGACAGGCTTCTTAAATTCCTGCTTATAAGGtaatggcttg ... gattttcaggCTTTGGATGCTGAGACTAGGTCAAGTACCCCTAATGCCATTAATCAGCAAA
EST: CGTCTGCTACTGCTGTCTTAGACAGGCTTCTTAAATTCCTGCTTATAAGG CTTTGGATGCTGAGACTAGGTCAAGTACCCCTAATGCCATTAATCAGCAAA
genomic: CGTCTGCTACTGCTGTCTTAGACAGGCTTCTTAAATTCCTGCTTATAAGGtaatggcttg ... gattttcaggCTTTGGATGCTGAGACTAGGTCAAGTACCCCTAATGCCATTAATCAGCAAA
gcctaacttgtcatgaagatttaattatttgtatcaattctctgtgattttcaggCTTTGGATGCTGAGACTAGGTCAAGTACCCCTAATGCCATTAATCAGCAAATGGACAAGCGTGTCAGCTCCCCGAGGAGG
ttttc CT-rich tract
atgaagatttaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctacctaggagtaaaagttgatttactaggtgatctgtgaattgcctaacttgtcatgaagatttaattatttgtatcaattctctgtgattttcaggCTTTGGATGCTGAGACTAGGTCAAGTACCCCTAATGCCATTAATCAGCAAATGGACAAGCGTGTCAGCTCCCCGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - atctgtg
- - - - - - - - - - - - - - - - - - - - - -ttgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcatg