1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...gatatagaactgtgtagagacgtcaaatgttgattgtttacagttgcagttgtggtgtttaaatttactgttattacaggctagctaattttatttatagGTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAA
species | Glycine max |
transcript | GLYMA17G13850.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GAGATGTTGAGACTCTCAAAATTAAAGGAAATTTACATCACTTGCGCACA GTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTEST: gi|16277629|gb|BI942480.1|BI942480
genomic: GAGATGTTGAGACTCTCAAAATTAAAGGAAATTTACATCACTTGCGCACAgtgagtgcct ... ttatttatagGTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATT
EST: TAAAGGAAATTTACATCACTTGCGCACA GTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTEST: gi|192294988|gb|FG986707.1|FG986707
genomic: TAAAGGAAATTTACATCACTTGCGCACAgtgagtgcct ... ttatttatagGTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATT
EST: GAGATGTTGAGACTCTCAAAATTAAAGGAAATTTACATCACTTGCGCACA GTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATT
genomic: GAGATGTTGAGACTCTCAAAATTAAAGGAAATTTACATCACTTGCGCACAgtgagtgcct ... ttatttatagGTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATT
gcagttgtggtgtttaaatttactgttattacaggctagctaattttatttatagGTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAA
agctaat putative branch site (score: 3)
ttttattt CT-rich tract
tgtttaaatttactgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatagaactgtgtagagacgtcaaatgttgattgtttacagttgcagttgtggtgtttaaatttactgttattacaggctagctaattttatttatagGTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAA
- - - -aactgtg
- - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - tgtggtg