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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgaattctctcatttaataaatcatgtaaattttaacatagaaacatgaactgaggtaacataccacaagaatggaagttgtaatatgaagctgttattactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTATGCTCAGTGTGATCAGAAAT

Basic information

species Glycine max
transcript GLYMA17G07380.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6725436|gb|AW309835.1|AW309835
EST:     ACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATA-TCAAGAGGCGACACTGATTA
genomic: ACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|151410382|gb|EV280197.1|EV280197
EST:     CAATGGATTGCTGGGTAATATTGATACAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|18693005|gb|BM521853.1|BM521853
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|21887322|gb|BQ740535.1|BQ740535
EST:     ATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: ATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|151407803|gb|EV277618.1|EV277618
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|5175496|gb|AI759829.1|AI759829
EST:     AATATTGATGC-AACAACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTGTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: AATATTGATGCAAAC-ACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|51335738|gb|CO979604.1|CO979604
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|10235983|gb|BE804871.1|BE804871
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|22525640|gb|BU084451.1|BU084451
EST:     GTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: GTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|19934808|gb|BQ079838.1|BQ079838
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|5760217|gb|AI965580.1|AI965580
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|192327522|gb|FK018198.1|FK018198
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|298193926|gb|HO040574.1|HO040574
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|193493506|gb|FK460088.1|FK460088
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGA
EST: gi|22932991|gb|BU550130.1|BU550130
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCNNNTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
EST: gi|16276935|gb|BI942118.1|BI942118
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTNTCTTGTAGATATTCAAGAGGCGACACTGATT
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATT
EST: gi|13478586|gb|BG508003.1|BG508003
EST:     CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG                         GTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA
genomic: CAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatga ... attactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaggtaacataccacaagaatggaagttgtaatatgaagctgttattactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTATGCTCAGTGTGATCAGAAAT
  aggtaac  putative branch site (score: 3)
                           ttgtaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtatgaattctctcatttaataaatcatgtaaattttaacatagaaacatgaactgaggtaacataccacaagaatggaagttgtaatatgaagctgttattactgcagGTTGGGACACTGATCAGTTTCTTGTAGATATTCAAGAGGCGACACTGATTATGCTCAGTGTGATCAGAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG