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gtgagttatcttatctatcctctatgtagatttatgagttacataaaatttagatcatcttaccaatattttttaataatttttattaaagGACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTTGATGAGCTCATTCTTGCCTTCTCTCGAGAGGGACCCACCAAGGAGTATG
species | Glycine max |
transcript | GLYMA17G07050.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG GACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTTEST: gi|254332042|gb|GR846245.1|GR846245
genomic: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATGgtgagttatc ... tttattaaagGACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTT
EST: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG GACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTTEST: gi|120534217|gb|EH262350.1|EH262350
genomic: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATGgtgagttatc ... tttattaaagGACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTT
EST: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG GACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTTEST: gi|105633983|gb|DW247346.1|DW247346
genomic: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATGgtgagttatc ... tttattaaagGACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTT
EST: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGCCAAATG GACTACATCTATGAAGACGAGTTGAGTCGCTTCGTTAATACTGGCGCACTTEST: gi|4286168|gb|AI441008.1|AI441008
genomic: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATGgtgagttatc ... tttattaaagGACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTT
EST: TGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGGACCCG-CAAATG GACTACATCTATGAAGEST: gi|10710524|gb|BF010242.1|BF010242
genomic: TGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACC-GTCAAATGgtgagttatc ... tttattaaagGACTACATCTATGAAG
EST: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG GACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTTEST: gi|105634392|gb|DW247541.1|DW247541
genomic: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATGgtgagttatc ... tttattaaagGACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTT
EST: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG GACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTT
genomic: CTGAACTCGGCCCCTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATGgtgagttatc ... tttattaaagGACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTT
agttacataaaatttagatcatcttaccaatattttttaataatttttattaaagGACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTTGATGAGCTCATTCTTGCCTTCTCTCGAGAGGGACCCACCAAGGAGTATG
ttttaat putative branch site (score: 3)
tttttatt putative PPT
ataaaatttagatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttatcttatctatcctctatgtagatttatgagttacataaaatttagatcatcttaccaatattttttaataatttttattaaagGACTACATCTATGAAGACGAGTTGAGTCACTTCGTTAATACTGGCGCACTTGATGAGCTCATTCTTGCCTTCTCTCGAGAGGGACCCACCAAGGAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG