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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcttcctctatgccaatttgatctgtataaaatttcacttgactgttttttattttacttatgattaatttctaatgggaaaccattgtgatggttgcagAACAGATATCCTCATTCTTTTCTTGAATCAAGACCCTAATCTTCTGCGATCCTATTTTGTTCGACAGGAAGGATTTGCTCTTCTTGGACTTTTG

Basic information

species Glycine max
transcript GLYMA17G03570.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03570.1 (Glycine max), 3'ss of exon 15
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 3'ss of exon 16
------------------------------gtattgcttcctctatgccaatttgatc---tgtataaaatttcacttgactgttttttattttactta-tgattaatttctaatgggaaaccattgtgatggttgcagAACAGATATCCTCATTCTTTTCTTGAATCAAGACCCTAATCTTCTGCGATCCTATTTTGTTCGACAGGAAGGATTTGCTCTTCTTGGACTTTTG
                               ||     || |    | || | || |    | | |   ||  || |      | |      | | ||  |   | | | || | |  || | |||||  ||| ||||| ||||||||||| ||||||||||||| ||||||||| || ||| | || || ||| |||||||    ||||||    | || || || ||  ||
gtatactattttactgactaattattagacataaaagctcattgtggtcactctgcttctgtttttttcataccattaagaaatctcagtggtaatttgctagctgaatactcacgataa-ctattgttgtggatgcagGACAGATATCCTGATTCTTTTCTTGACTCAAGACCCCAACCTTTTACGTTCTTATGTTGTTCGGACAGAAGGAAACCCCCTCCTCGGTCTCCTG

upper sequence: GLYMA17G03570.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 15
gtattgcttcctctatgccaatttgatct--gtataaaatttcacttgactgttttttattttacttatgattaattt----ctaatgggaaacca-ttgtg-atggttgcagAACAGATATCCTCATTCTTTTCTTGAATCAAGACCCTAATCTTCTGCGATCCTATTTTGTTCGACAGGAAGGATTTGCTCTTCTTGGACTTTTG
||| ||  |   |   |   || ||   |  | ||||||||   |||  ||   | |   ||| ||||  ||| ||||    ||||   |||  || ||||  |||| ||||| ||||| ||||||||||||||| ||||||| || || || |||||||| || ||| |  |||| ||||||||| || | |||||||||||| ||
gtaatgaatgaacccagaatatctgtctttagcataaaattcagcttttcttaatctgcatttccttaccattgatttggtcctaacaagaagtcaattgtttatggatgcagGACAGACATCCTCATTCTTTTCCTGAATCAGGATCCAAACCTTCTGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347786|gb|GR854035.1|GR854035
EST:     GTTGTCACCAATGTTTTGCAAAGTCAAGATAAGAAGCTTGTGTTAACT-G                         ----GATATCCTCATTCTTTTCTTGAATCAAGACCCTAATCTTCTGCGATC
genomic: GTTGTCACCAATGTTTTGCAAAGTCAAGATAAGAAGCTTGTGTTAACTGGgtattgcttc ... atggttgcagAACAGATATCCTCATTCTTTTCTTGAATCAAGACCCTAATCTTCTGCGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttattttacttatgattaatttctaatgggaaaccattgtgatggttgcagAACAGATATCCTCATTCTTTTCTTGAATCAAGACCCTAATCTTCTGCGATCCTATTTTGTTCGACAGGAAGGATTTGCTCTTCTTGGACTTTTG
                        ttctaat  putative branch site (score: 2)
     tattttacttatgatt  TA-rich tract