1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gcccctgctaatataataccatgtttttattcatttgcagcattatgagctatgaggatattgtattgagttttgactacttttgcttaatcttttgcagGTGAATGTTGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTGATATTACTACATTTACCATATTCGGT
species | Glycine max |
transcript | GLYMA16G33080.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGATGGTGCTTTGGAGCAGTACCTTGCTAAGATGAAGGATTCAGCG GTGAATGTTGACGTAEST: gi|11412663|gb|BF424674.1|BF424674
genomic: GTGGAGATGGTGCTTTGGAGCAGTACCTTGCTAAGATGAAGGATTCAGCGgtatgatctt ... tcttttgcagGTGAATGTTGACGTA
EST: GTGGAGATGGTGCTTTGGAGCAGTACCTTGCTAAGATGAAGGATTCAGCG GTGAATGTTGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTTEST: gi|31459588|gb|CD401616.1|CD401616
genomic: GTGGAGATGGTGCTTTGGAGCAGTACCTTGCTAAGATGAAGGATTCAGCGgtatgatctt ... tcttttgcagGTGAATGTTGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTT
EST: GTGGAGATGGTGCTTTGGAGCAGTACCTTGCTAAGATGAAGGATTTAGCG GTGAATGTTGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTT
genomic: GTGGAGATGGTGCTTTGGAGCAGTACCTTGCTAAGATGAAGGATTCAGCGgtatgatctt ... tcttttgcagGTGAATGTTGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTT
tgagctatgaggatattgtattgagttttgactacttttgcttaatcttttgcagGTGAATGTTGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTGATATTACTACATTTACCATATTCGGT
tcttttgc CT-rich tract
atattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccctgctaatataataccatgtttttattcatttgcagcattatgagctatgaggatattgtattgagttttgactacttttgcttaatcttttgcagGTGAATGTTGACGTAGGTGAATCAGATTTACAAGAGGGGGATTTGGAGCTTTCATCAAGAGCCATGAGCTTGTGATATTACTACATTTACCATATTCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
-cccctgc
- - - - - - - - - ccatgtt
- - - - - - - - - - - - - - - - - -tgcagca
- - - - - - - - - - - - - - - - - - - - - - - - -ctatgag