1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tccatgggcctgcttttagaagttattattcagtgcttttgctatattcaattctttgtatctattattaattaattatattaatattggtgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGCACG
species | Glycine max |
transcript | GLYMA16G27210.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAG GGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCAEST: gi|9820553|gb|BE556063.1|BE556063
genomic: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAGgtatcctatt ... tgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCA
EST: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAG GGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGCEST: gi|11412011|gb|BF424022.1|BF424022
genomic: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAGgtatcctatt ... tgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGC
EST: AGGTTCTCGGAGCCTCAATGTGTGGACCTGATGCACCTGAAATTATGCAG GGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGCEST: gi|15202278|gb|BI425317.1|BI425317
genomic: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAGgtatcctatt ... tgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGC
EST: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAG GGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGCEST: gi|254323261|gb|GR840066.1|GR840066
genomic: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAGgtatcctatt ... tgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGC
EST: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAG GGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGCEST: gi|17153856|gb|BM143789.1|BM143789
genomic: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAGgtatcctatt ... tgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGC
EST: AGGTTCTCGGAGCCTCAATGTGTGGACCTGATGCACCTGAAATTATGCAG GGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGCEST: gi|57575684|gb|CX548659.1|CX548659
genomic: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAGgtatcctatt ... tgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGC
EST: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAG GGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGC
genomic: AGGTTCTCGGAGCCTCAATGTGTGGGCCTGATGCACCTGAAATTATGCAGgtatcctatt ... tgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGC
attcaattctttgtatctattattaattaattatattaatattggtgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGCACG
tattaat putative branch site (score: 2)
attctttgtatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatgggcctgcttttagaagttattattcagtgcttttgctatattcaattctttgtatctattattaattaattatattaatattggtgatcgatagGGTATTGCTGTTGCGTTGAAGTGTGGAGCTACCAAGGCACAGTTTGATAGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - ggcctgc
- - - - - - - - - - - - - - -tcagtgc
- - - - - - - - - - - - - - - - - - - -tgctata