Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttcttggttttagtaatcctcatttttattgaatactctgttatctataataagattataagaccattttttccctttgttttggttatgcagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATCGAACAATATGGCA

Basic information

species Glycine max
transcript GLYMA16G26850.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26850.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 13
gtatgc---tttcttggttttagtaatcctcatttttattgaatactctgttatctataataagattataagaccattttttccctttgttttggttatgcagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATCGAACAATATGGCA
|||||    | ||||| |||  ||  |        ||    | |  ||| |   |  | ||| | | ||||    || |||| ||  |||||   || | ||||  |||||| |  | || ||||| || | |||||||||||||||||| ||||| ||||||||||| || |||||  |  | ||| | ||    | |||||
gtatgacagtatcttgatttatgtggta-------ttgcaaagttttctatagccatttatacggt-ataaatatatgtttttcc--tgtttc--ttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATTGTCAATAATCCTGCCTTCTGGGAACGGCTGGGTCTTGATACTTTTGGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207731784|gb|GD707537.1|GD707537
EST:     TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgcagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT
EST: gi|208183613|gb|GD982885.1|GD982885
EST:     TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgcagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT
EST: gi|151413077|gb|EV282885.1|EV282885
EST:     TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgcagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT
EST: gi|209728281|gb|BW658493.1|BW658493
EST:     TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgcagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT
EST: gi|151398633|gb|EV268504.1|EV268504
EST:     TCAAGCTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgcagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatctataataagattataagaccattttttccctttgttttggttatgcagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATCGAACAATATGGCA
                         ccattttttccctttg  CT-rich tract
       tataataagattataa  TA-rich tract