1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...taactggtccctgaagcagttatgtatttatatagttgaagatgtgttggaggctttcaataatctagcaataaggttaaaggttatgtttgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAAGTTGGCTAATATGTCGATTGGTACTCGAAGACAATCCTTAGGACAAAC
species | Glycine max |
transcript | GLYMA16G17580.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAEST: gi|207834817|gb|GD807250.1|GD807250
genomic: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAEST: gi|254345558|gb|GR851720.1|GR851720
genomic: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAEST: gi|208317251|gb|GE111902.1|GE111902
genomic: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: AAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAEST: gi|208079945|gb|GD874159.1|GD874159
genomic: AAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: CTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAEST: gi|254345557|gb|GR851719.1|GR851719
genomic: CTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAEST: gi|193729034|gb|FK663882.1|FK663882
genomic: GAAGACTACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: AATCAAAAATATCGATTACCAGGAAAAGGCAGCCCAA CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAEST: gi|208134784|gb|GD932241.1|GD932241
genomic: AATC-AAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
EST: ACTCGACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAA CTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
genomic: ACTCAACAATCAAAATATCGATTACCAGGAAAAGGCAGCCCAAgtaagcactt ... tgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGA
gttggaggctttcaataatctagcaataaggttaaaggttatgtttgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAAGTTGGCTAATATGTCGATTGGTACTCGAAGACAATCCTTAGGACAAAC
tttgttt CT-rich tract
tttcaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taactggtccctgaagcagttatgtatttatatagttgaagatgtgttggaggctttcaataatctagcaataaggttaaaggttatgtttgtttggcagCTTCTATAAACAAGGGGAGGACTGCTCGTGGGGTTTCAGAAACAGCTGAGAAGTTGGCTAATATGTCGATTGGTACTCGAAGACAATCCTTAGGACAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA