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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcattacatgcttggtagagtattgcaagagggtcttgcttcacaaacttattgactccctttttttttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAATTCAAGCCACTCCCCTACAAACCAGGAAGCAGAGGTCCTGCAGAAGCAG

Basic information

species Glycine max
transcript GLYMA16G06850.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214007883|gb|DB987813.1|DB987813
EST:     AATTAGAGGTGATCAGCAACATTTTGCTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|208263491|gb|GE061119.1|GE061119
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|6566164|gb|AW233801.1|AW233801
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGNCAGATCTTC
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTC
EST: gi|15661766|gb|BI699137.1|BI699137
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|37994251|gb|CF805997.1|CF805997
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|14991365|gb|BI317038.1|BI317038
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGGGATGAGTGGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|213594893|gb|DB977221.1|DB977221
EST:     AATTAGAGGTGATCAGCAACATTTTCATCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|7925329|gb|AW831416.1|AW831416
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAT                         GCATGCTGGCAGATCTTCACCCGACTTCTGCACAGAATTGATGAAGGGGGA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|19053614|gb|BM732281.1|BM732281
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|38191492|gb|CF920698.1|CF920698
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|16343150|gb|BI968745.1|BI968745
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|58023690|gb|CX710431.1|CX710431
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|16346631|gb|BI972226.1|BI972226
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|192310376|gb|FK002256.1|FK002256
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|33390426|gb|CA853621.1|CA853621
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|16346044|gb|BI971639.1|BI971639
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|192330835|gb|FK021608.1|FK021608
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|37994259|gb|CF806005.1|CF806005
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|58020056|gb|CX706798.1|CX706798
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|37995677|gb|CF807266.1|CF807266
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|7588280|gb|AW704079.1|AW704079
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
EST: gi|7693442|gb|AW761534.1|AW761534
EST:     AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAG                         GCATCCTGNCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA
genomic: AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGgtaagatcat ... ttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaagagggtcttgcttcacaaacttattgactccctttttttttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAATTCAAGCCACTCCCCTACAAACCAGGAAGCAGAGGTCCTGCAGAAGCAG
                           tattgac  putative branch site (score: 2)
                         cttattgactcccttt  CT-rich tract
                                      tttttttttcttatca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagatcattacatgcttggtagagtattgcaagagggtcttgcttcacaaacttattgactccctttttttttcttatcagGCATCCTGGCAGATCTTCACCCCACTTCTGCACAGAATTGATGAAGGGGAATTCAAGCCACTCCCCTACAAACCAGGAAGCAGAGGTCCTGCAGAAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC