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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccaagtttggctgctcttagatgattagttatttgccacttagttctatcatacccgtaagattgactagtataattatttgctttcctctttcctcaacctccccctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTGGCTCGAGGCTTATAACCTGCGAGGCTGACAAGACGATAAAAATGTGGAA

Basic information

species Glycine max
transcript GLYMA15G15960.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15960.2 (Glycine max), 3'ss of exon 15
lower sequence: EFJ17196 (Selaginella moellendorffii), 3'ss of exon 11
gtatccaagtttggctgctcttagatgattagttatttgccacttagttctatcatacccgtaagattgactagtataattatttgctttcctctttcctcaacctccccctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTGGCTCGAGGCTTATAACCTGCGAGGCTGACAAGACGATAAAAATGTGGAA
                                                                 |   | |    |    |  || |  ||   || |  |||     |   |  ||||||| ||||||   |||||  |||| | |||   | | |  ||  | || ||  |  | ||| |||| ||||| ||||||||||||||||||||||||| 
---------------------------------------------------------------gtacgcattttggtggggaagtggt--ccaggttgcgtaactcttgctcatggcagGTTCGCTGGATGCCGAAGCGAGTATCTTTGCGGCTTCTTTCGACATCACCGGGACCCGACTTGTAACTTGCGAAGCTGACAAGACGATAAAAATGTGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193446770|gb|FK411733.1|FK411733
EST:     TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTG                         GTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
genomic: TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTGgtatccaagt ... cctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
EST: gi|6070929|gb|AW100316.1|AW100316
EST:     TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTG                         GTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
genomic: TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTGgtatccaagt ... cctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
EST: gi|254313964|gb|GR831593.1|GR831593
EST:     TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTG                         GTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
genomic: TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTGgtatccaagt ... cctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
EST: gi|254319813|gb|GR829217.1|GR829217
EST:     TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTG                         GTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
genomic: TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTGgtatccaagt ... cctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
EST: gi|21993683|gb|BQ785211.1|BQ785211
EST:     TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTG                         GTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
genomic: TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTGgtatccaagt ... cctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
EST: gi|37994708|gb|CF806333.1|CF806333
EST:     TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTG                         GTTCCCTGGATAGTGAAGCTGGTATTTATGC
genomic: TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTGgtatccaagt ... cctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGC
EST: gi|193558888|gb|FK514511.1|FK514511
EST:     TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTG                         GTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG
genomic: TTGGAAGAGTGGTCATAATTTCCAGCAATCCCAAACAATTGTACAGCCTGgtatccaagt ... cctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgactagtataattatttgctttcctctttcctcaacctccccctcttacagGTTCCCTGGATAGTGAAGCTGGTATTTATGCTTGTACCTATGATCTTACTGGCTCGAGGCTTATAACCTGCGAGGCTGACAAGACGATAAAAATGTGGAA
 gattgac  putative branch site (score: 3)
               ttatttgctttcctct  putative PPT
     actagtataattattt  TA-rich tract