1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gaaagtgttgtacaaacatgtattcatgtgcttcagcggtagcttaattttccaggtcttaattctgttttgtctgacagtgtaatgtgtttcctttcagGATGCACACTGGTACGGAGCTTTTTAAAGCTGAGTCCACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATCCCGATGCAATCATGTGCTGTTCT
species | Glycine max |
transcript | GLYMA15G13640.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGTTCGCCTGAGGCCCTTACCTTAGCCCGGTGGATCTTTAGAAGCTATAG GATGCACACTGGTACGGAGCTTTTTAAAGCTGAGTCCACAGCTGGTGATGCEST: gi|21601238|gb|BQ611569.1|BQ611569
genomic: GGTTCGCCTGAGGCCCTTACCTTAGCCCGGTGGATCTTTAGAAGCTATAGgtttgtttta ... ttcctttcagGATGCACACTGGTACGGAGCTTTTTAAAGCTGAGTCCACAGCTGGTGATGC
EST: GGTTCGCCTGAGGCCCTTACCTTAGCCCGGTGGATCTTTAGAAGCTATAG GATGCACACTGGTACGGAGCTTTTTAAAGCTGAGTCCACAGCTGGTGATGC
genomic: GGTTCGCCTGAGGCCCTTACCTTAGCCCGGTGGATCTTTAGAAGCTATAGgtttgtttta ... ttcctttcagGATGCACACTGGTACGGAGCTTTTTAAAGCTGAGTCCACAGCTGGTGATGC
aattttccaggtcttaattctgttttgtctgacagtgtaatgtgtttcctttcagGATGCACACTGGTACGGAGCTTTTTAAAGCTGAGTCCACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATCCCGATGCAATCATGTGCTGTTCT
gtctgac putative branch site (score: 3)
tgtttcctttc putative PPT
tcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtgttgtacaaacatgtattcatgtgcttcagcggtagcttaattttccaggtcttaattctgttttgtctgacagtgtaatgtgtttcctttcagGATGCACACTGGTACGGAGCTTTTTAAAGCTGAGTCCACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATCCCGATGCAATCATGTGCTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -tgttgta
- - - - - - caaacat
- - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - -ccaggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgaca