1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtattgttttaatatgtgcatgtgaaatagattacaggtccacttcaccgtatcttggattaaaacatgattttcttatacgcgtttcaaaataaatgtatttcttatccttttttttaatatatgtagGCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAG
species | Glycine max |
transcript | GLYMA15G10870.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATGTCGTACAAACAGCTTGGGCTCTAATGGCTCTAATTCATGCTGGGCAG GCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAATEST: gi|51338033|gb|CO981899.1|CO981899
genomic: ATGTCGTACAAACAGCTTGGGCTCTAATGGCTCTAATTCATGCTGGGCAGgtattgtttt ... atatatgtagGCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAAT
EST: ATGTCGTACAAACAGCTTGGGCTCTAATGGCTCTGATTCATGCTGGGCAG GCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAATEST: gi|16342550|gb|BI968145.1|BI968145
genomic: ATGTCGTACAAACAGCTTGGGCTCTAATGGCTCTAATTCATGCTGGGCAGgtattgtttt ... atatatgtagGCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAAT
EST: ATGTCGTACAAACAGCTTGGGCTCTAATGGCTCTAATTCATGCTGGGCAG GCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAATEST: gi|5606831|gb|AI900929.1|AI900929
genomic: ATGTCGTACAAACAGCTTGGGCTCTAATGGCTCTAATTCATGCTGGGCAGgtattgtttt ... atatatgtagGCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAAT
EST: ATGTCGTACAAACAGCTTGGGCTCTAATGGCTCTAATTCATGCTGGGCAG GCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAAT
genomic: ATGTCGTACAAACAGCTTGGGCTCTAATGGCTCTAATTCATGCTGGGCAGgtattgtttt ... atatatgtagGCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAAT
cttatacgcgtttcaaaataaatgtatttcttatccttttttttaatatatgtagGCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAG
ttttaat putative branch site (score: 3)
tttcttatcctttttt CT-rich tract
tttcaaaataaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgttttaatatgtgcatgtgaaatagattacaggtccacttcaccgtatcttggattaaaacatgattttcttatacgcgtttcaaaataaatgtatttcttatccttttttttaatatatgtagGCTGAGAAAGATCCAACTCCTATTCACAATGCAGCAAAGTTACTCATCAATTCTCAGCTTGAAGATGGTGATTGGCCTCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG