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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttacatatagttttgaacaatggagaataatacccatcaaaatctaatattgggacagtaatgtgccttttttatttttaatttcagAAAGCATCATGGAGCCATATCTAAGATACTTGTATACATATGTTTCTATATCTGGTCCACACTTAGGTTATATGTATAGTTCGAACTCTATATTCAATTC

Basic information

species Glycine max
transcript GLYMA15G05480.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 11
gtatttacatatagttttgaacaatggagaata-atacccatcaaaatctaatattgggacagtaatgtgccttttttatttttaatttcagAAAGCATCATGGAGCCATATCTAAGATACTTGTATACATATGTTTCTATATCTGGTCCACACTTAGGTTATATGTATAGTTCGAACTCTATATTCAATTC
|||  ||| | |||||||||    || |    |  | |  |    | |||  |  |       | ||||   ||  ||  ||||     |||| |||   ||||| || || |||||||||||| |||||||||||||||||||||| |||||||| || ||| |||||||||| |||||| |||| |||||
gtaggtac-tctagttttgattcttgaatgccatgttcttaggttagtctg-tgatatattgctgatgtctgttgctttgttttgg---cagAGAGCTCTATGGAACCTTACCTAAGATACTTGCATACATATGTTTCTATATCTGGCCCACACTTGGGATATCTGTATAGTTCAAACTCTCTATTTAATTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccatcaaaatctaatattgggacagtaatgtgccttttttatttttaatttcagAAAGCATCATGGAGCCATATCTAAGATACTTGTATACATATGTTTCTATATCTGGTCCACACTTAGGTTATATGTATAGTTCGAACTCTATATTCAATTC
                                           ttttaat  putative branch site (score: 3)
                               tgccttttttattttt  CT-rich tract
                                   ttttttatttttaatt  TA-rich tract