1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttgactttcaatctcattttatcaccgattcaccatgcttagtggtgatattgcacttctatctataaggtctgatgttaatggattttataatttacagTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCACTGCCAATATCCAAATTGTCGCAAGGTGAAGGGGCTTTTCCGTCATG
species | Glycine max |
transcript | GLYMA15G00250.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGTTAT-ACAG TTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCEST: gi|254344017|gb|GR850927.1|GR850927
genomic: AGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGT-ATTACAGgtttgtatga ... taatttacagTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGC
EST: CAGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGTATTACAG TTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCEST: gi|9205404|gb|BE331628.1|BE331628
genomic: CAGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGTATTACAGgtttgtatga ... taatttacagTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCC
EST: CAGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGTATTACAG TTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCEST: gi|7147178|gb|AW509100.1|AW509100
genomic: CAGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGTATTACAGgtttgtatga ... taatttacagTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCC
EST: CAGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGTATTACAG TTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCC
genomic: CAGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGTATTACAGgtttgtatga ... taatttacagTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCC
tgatattgcacttctatctataaggtctgatgttaatggattttataatttacagTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCACTGCCAATATCCAAATTGTCGCAAGGTGAAGGGGCTTTTCCGTCATG
tgttaat putative branch site (score: 3)
atgttaatggatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgactttcaatctcattttatcaccgattcaccatgcttagtggtgatattgcacttctatctataaggtctgatgttaatggattttataatttacagTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCACTGCCAATATCCAAATTGTCGCAAGGTGAAGGGGCTTTTCCGTCATG
- - - - caatctc
- - - - - - - - - - - - - - - - ccatgct
- - - - - - - - - - - - - - - - - - - - agtggtg
- - - - - - - - - - - - - - - - - - - - - - - - tattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgatg