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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttgcttctattcttatgactgactgttatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttgtgcagCATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAG

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 15
gttctttgcttctattcttatgactgactgttatttcttgtcagaataatttcttgaacct-tcttgtgtgttgcttgtgcagCATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAG
||   |  | | |    |  |   || ||| | | |  | |   |    | | || ||||  | | || | || ||  ||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| || || |||
gtcggtaacctttgcattgtt--ttggctgatctcttctctttaatctctgtgttaaaccaatatcgtatttt-ctgatgcagCATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAG

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G477336_T01 (Zea mays), 3'ss of exon 5
---------------------gttctttgcttctattcttatgactgactgttatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttgtgcagCATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAG
                     | ||  | | | |    |  ||     ||| ||| ||   |  | ||   |  || |     |||   | ||| |  |||||||||| || ||||||||||| ||||| |||| |||||| ||||| |||| ||| ||||| |||
gttgtacttgcgagccctccaggtcagtacctttgcattggtg--cagctgatatctccgcttcgtattcctgtttaactaaccttacattttg-taatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G352837_T01 (Zea mays), 3'ss of exon 4
---------------------gttctttgcttctattcttatgactgactgttatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttgtgcagCATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAG
                     | ||  | | |      |  ||     ||| ||| ||   |  | ||   |  || |     |||   | ||| |  |||||||||| || ||||||||||| ||||| |||| |||||| ||||| |||| ||| ||||| |||
gttgtacttgcgagccctccaggtcagtaccttcgcattggtg--cagctgatatctccgcttcgtattcctgtttaactaaccttacattttg-taatgcagCATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAG

upper sequence: GLYMA14G37510.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 17
-----gttctttgcttctattcttatgactgactgttatttcttg---tcagaataatttcttgaaccttcttgtgtgttgcttgtgcagCATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAG
      |  |||    |||| || ||   |||   |||||||           ||  ||||||| |     |  |   |  ||| ||||||||||| | || ||||| || |||||||||||||||||||| ||||||||||| || || |||
gtataatggtttctcactat-ctgattgatgaactttatttcacagacctttgattgtttcttggattaaatgattcatctcttatgcagCATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttatttcttgtcagaataatttcttgaaccttcttgtgtgttgcttgtgcagCATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAG
                 aataatttcttgaa  TA-rich tract