1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtataatattggttgcattttattatcaatctattgcattaaggttgttgatttattatgtaattcccttctggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG
species | Glycine max |
transcript | GLYMA14G07120.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAGEST: gi|6072812|gb|AW102199.1|AW102199
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAGEST: gi|16345479|gb|BI971074.1|BI971074
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAGEST: gi|208153176|gb|GD949189.1|GD949189
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAGEST: gi|16342203|gb|BI967798.1|BI967798
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAGEST: gi|19269540|gb|BM885796.1|BM885796
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
aatctattgcattaaggttgttgatttattatgtaattcccttctggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG
tgttgat putative branch site (score: 4)
ttcccttctg putative PPT
ttgttgatttattatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatattggttgcattttattatcaatctattgcattaaggttgttgatttattatgtaattcccttctggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAGGGATTGTTAACAACAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG