Sequence
atgc intronic sequence ATGC exonic sequencegtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
Basic information
species | Glycine max |
transcript | GLYMA13G43680.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 15
gtattaactcttt--tcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagac-atcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
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gtatatattgtgtgctccatgcaagaatttttattttgttaa----tgtattttctattgtagt---attttgtgcactacaaatttatcccgttgtacatttac---------agGTCACCACGATGTATCACTTGGATCGCCCTATGTACTTGTTGGGATATCTAGCGAATCAAAGCCGAGTTTATCTTATTGACAAGGAATTCAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G000645_T01 (Zea mays), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
| || | || | | | | | | || | | || || || | || || |||| | |||| |||| | |||| ||||| |||| ||||||||| ||||| |||||||||||||||||| |||| ||||||||||| |||||| | |||||||| ||||| ||
--gtaaatatagtctgctcgaaaacatttcttctgtttaaattctctatatgggcacttcatgtcatgacttcaattgctt-acatagt----tataagctttatacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACTTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
gtattaactcttttcccttctagat--ttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
||| || | | | | | | | || | | | ||| | | || || | || || | || | | | |||| || | | |||| ||||| |||| ||||||||| ||||| |||||| | |||||||||||||| ||||||||||| |||||| | |||||||| ||||||||
gtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgt-gagtcacgacttcaattgtttacacagtt--ataagctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 16
gtattaactcttt-tcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatt-tagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
||||| ||| | | | || | ||| | || | | || || || | | ||| | |||| || | || | ||| || |||| ||||| |||||||| ||||| || || ||||| || || ||||||||||| |||||||||||||| ||| | |||||||| || |||||
--gttaacacttaatttcaccataatctgtagaatcttgaatgcatatctgtttgattcctga-gagtgtttggttttatgtgctatct--atttaccatc-tcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G448913_T01 (Zea mays), 3'ss of exon 4
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttga-tgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
||| |||| | | || | | ||||| || | |||| ||| ||| || || ||| |||| | || ||| | || | ||| ||||| |||||| ||||||||||| |||| ||||||||||| |||||| | |||||||| ||||| ||
-------------------------------tttctgaaagtagactccaataccta--aattggcctgttaccg-catggtccattatgaacttgtagccatattgacattagaaatacac-atgatgcaatagGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G141587_T05 (Zea mays), 3'ss of exon 15
-gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatt-tagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
| | | ||| | || | | || | | | | | |||| || | || | | | | ||| || || | ||| || |||| || || ||||||| ||||| || || ||||| || || |||||||||||||||||||| ||||| ||| | ||||| || | |||||
gaggtgagttttttcatcacttaaaaagacatcctatatatctttcaagttagatcattta--tgga-tagagtgctttcatgtcataaccatttcatattttcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G141587_T02 (Zea mays), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatt-tagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
| | | ||| | || | | || | | | | | |||| || | || | | | | ||| || || | ||| || |||| || || ||||||| ||||| || || ||||| || || |||||||||||||||||||| ||||| ||| | ||||| || | |||||
--gtgagttttttcatcacttaaaaagacatcctatatatctttcaagttagatcattta--tgga-tagagtgctttcatgtcataaccatttcatattttcatgtgttacagGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttt-tttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
|| |||||| ||| | | ||| || || | || ||| ||| ||| | | || ||| | | |||| ||| | |||||||||| |||| |||| ||||||| || |||||||||||||| ||||| || || ||||| | ||||||||||||||||||||||| ||
------gtaaggctcatttctaggtttttgg---aaagaaacgttttatgttttttattttgttgtaat-tgagattcagtactcctctta------------tat---tacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
|| |||| | | || ||| |||| | || | | | | || | |||| || ||||||| || |||| ||||||||||||||| ||||| ||||| || ||| |||| |||||||| || ||||| ||| | |||||||| || ||
--------------------------------gtactcaagagtc-tatttttatttctaatc-atctttatgagctacattatataatagctgctaatatacctgtggc-agGTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTAGGCTATATTGCCAACCAAAGCCGGGTTTACTTGGTAGACAAAGAATTCAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatga--ttatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
|| | | | | ||| | ||| ||| | | | || | || | ||||| | | | | | | |||||||| || |||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||| ||| | |||||||| || ||
---------------------------gtattgtgcatatatgttggttactctgatttgg--aagttgttatgaac-tggattctaatgatggttgctaacatcgtaatactagGTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTGGGATATCTTGCAAGTCAAAGTCGGGTTTTCTTGGTAGACAAAGAATTCAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaat-tgaactacaaggatcatgagacatcttgatgcataatgattatgaattt-agGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
||||| | || ||| || || | ||| | || || | || | | | || |||| | || || ||| | || || ||||||| || ||||||||||||||||| || ||||| |||||||||||||| || || ||||| || || ||| | || ||||||||||| ||
gtattgtgtattgtcca--------cccttgtcttgaaagtatttccatatgtgcagatgatatccatttcatggatttcttggagcttttttgttaaataaccatatgttccagGTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAA
upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
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----------------gtataagagagttgattccaggttgtatt--tctatatatatgatcttcattctaaggtgca---gtcatataaattgttaatg-tgatgatttcagGTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298199623|gb|HO043500.1|HO043500EST: TTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAG GTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTT
genomic: TTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGgtattaactc ... atgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
ataatgattatgaatt TA-rich tract