Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA

Basic information

species Glycine max
transcript GLYMA13G43680.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 15
gtattaactcttt--tcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagac-atcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
||||  | | | |  ||| | | ||| || |  |||    ||    |||   |||| || || |   | |    | |  |  |    |||  | || | | | |          |||| || ||||||| ||| ||||| ||||| |||||||||||||||||||| || || ||||| || |||||| | |||||||| || || ||
gtatatattgtgtgctccatgcaagaatttttattttgttaa----tgtattttctattgtagt---attttgtgcactacaaatttatcccgttgtacatttac---------agGTCACCACGATGTATCACTTGGATCGCCCTATGTACTTGTTGGGATATCTAGCGAATCAAAGCCGAGTTTATCTTATTGACAAGGAATTCAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G000645_T01 (Zea mays), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
   | ||     |   ||   | |  | |  | |    ||    | |  ||      || ||   |  ||    ||      ||||  |     ||||   ||||   |  |||| ||||| |||| ||||||||| ||||| |||||||||||||||||| |||| ||||||||||| |||||| | |||||||| ||||| ||
--gtaaatatagtctgctcgaaaacatttcttctgtttaaattctctatatgggcacttcatgtcatgacttcaattgctt-acatagt----tataagctttatacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACTTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
gtattaactcttttcccttctagat--ttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
|||  ||   | | | | |  | |   || |  | |    |||   | |  ||      ||  | ||   || |     ||     |    | |  ||||   || |   |  |||| ||||| |||| ||||||||| ||||| |||||| | |||||||||||||| ||||||||||| |||||| | |||||||| ||||||||
gtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgt-gagtcacgacttcaattgtttacacagtt--ataagctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 16
gtattaactcttt-tcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatt-tagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
   ||||| |||  |  |  |   || | |||  |    ||    | |   ||   ||      ||       |  | ||| |  ||||  ||  |  ||  | |||  ||  |||| ||||| |||||||| ||||| || || ||||| || || ||||||||||| |||||||||||||| ||| | |||||||| || |||||
--gttaacacttaatttcaccataatctgtagaatcttgaatgcatatctgtttgattcctga-gagtgtttggttttatgtgctatct--atttaccatc-tcatgtgttacagGTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G448913_T01 (Zea mays), 3'ss of exon 4
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttga-tgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
                               |||   |||| |   | || |   |   |||||  ||   |    ||||   |||  |||     ||   ||  |||  ||||  |   || ||| | || | ||| ||||| |||||| ||||||||||| |||| ||||||||||| |||||| | |||||||| ||||| ||
-------------------------------tttctgaaagtagactccaataccta--aattggcctgttaccg-catggtccattatgaacttgtagccatattgacattagaaatacac-atgatgcaatagGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G141587_T05 (Zea mays), 3'ss of exon 15
-gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatt-tagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
    | |  | |||   |   || |     |   || | |    |   |     |  ||||  || | || |  | |     | |||    ||     ||  | |||  ||  |||| || ||  ||||||| ||||| || || ||||| || || |||||||||||||||||||| ||||| ||| | ||||| ||  | |||||
gaggtgagttttttcatcacttaaaaagacatcctatatatctttcaagttagatcattta--tgga-tagagtgctttcatgtcataaccatttcatattttcatgtgttaCAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G141587_T02 (Zea mays), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatt-tagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
   | |  | |||   |   || |     |   || | |    |   |     |  ||||  || | || |  | |     | |||    ||     ||  | |||  ||  |||| || ||  ||||||| ||||| || || ||||| || || |||||||||||||||||||| ||||| ||| | ||||| ||  | |||||
--gtgagttttttcatcacttaaaaagacatcctatatatctttcaagttagatcattta--tgga-tagagtgctttcatgtcataaccatttcatattttcatgtgttacagGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttt-tttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
             ||  |||||| ||| | |   ||| ||   || |   || ||| |||  ||| | |   ||  |||  |  | ||||             |||   |  |||||||||| |||| |||| ||||||| || |||||||||||||| ||||| || || |||||  | ||||||||||||||||||||||| ||
------gtaaggctcatttctaggtttttgg---aaagaaacgttttatgttttttattttgttgtaat-tgagattcagtactcctctta------------tat---tacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
                                 ||   |||| |  |   ||  ||| ||||  | ||  | |    |    | ||  |      ||||     ||     ||||||| || |||| ||||||||||||||| ||||| ||||| || ||| |||| |||||||| || ||||| ||| | |||||||| || ||
--------------------------------gtactcaagagtc-tatttttatttctaatc-atctttatgagctacattatataatagctgctaatatacctgtggc-agGTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTAGGCTATATTGCCAACCAAAGCCGGGTTTACTTGGTAGACAAAGAATTCAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatga--ttatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
                            || | |  | |    |||   | |||  |||     |  |   | || | ||     |  |||||  |  | |  |  | |   |||||||| || |||| ||||||||||||||| ||||| |||||||||||||||||||  |||||||| ||||  ||| | |||||||| || ||
---------------------------gtattgtgcatatatgttggttactctgatttgg--aagttgttatgaac-tggattctaatgatggttgctaacatcgtaatactagGTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTGGGATATCTTGCAAGTCAAAGTCGGGTTTTCTTGGTAGACAAAGAATTCAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaat-tgaactacaaggatcatgagacatcttgatgcataatgattatgaattt-agGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
|||||   | || |||           || || |  |||  | ||    ||       | || |  | | || ||||     |     ||  ||   ||| |  ||   ||  ||||||| || ||||||||||||||||| || ||||| |||||||||||||| || || ||||| || || ||| | || ||||||||||| ||
gtattgtgtattgtcca--------cccttgtcttgaaagtatttccatatgtgcagatgatatccatttcatggatttcttggagcttttttgttaaataaccatatgttccagGTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAA

upper sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 15
gtattaactcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
                 |   |||    |  ||  |    | |||   |  | | | | |  |  | |  ||||  ||   | ||| |  ||   ||||| | |||| || ||||||| || |||||||| |||||||| || ||||| ||||| ||||||||||| |  |||||||| |||||| | || ||||||||||||||
----------------gtataagagagttgattccaggttgtatt--tctatatatatgatcttcattctaaggtgca---gtcatataaattgttaatg-tgatgatttcagGTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298199623|gb|HO043500.1|HO043500
EST:     TTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAG                         GTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTT
genomic: TTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGgtattaactc ... atgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
                                    ataatgattatgaatt  TA-rich tract