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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatgacacatgacacattgttttatctttggcaactttttgtattgctttgtatcaacctactctcccctttccctgtcttatctatttaactgacattggcatattaattaacctttttaaataaagGATGAAAACAGATTTGATATAAAAAAAATTGTGAGCGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAA

Basic information

species Glycine max
transcript GLYMA13G28720.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28720.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 15
gtaaagatgacacatgacacattgttttatctttggcaactttttgtattgctttgtatcaacctactctcccctttccctgtcttatctatttaactgacattggcatattaattaacctttttaaataaagGATGAAAACAGATTTGATATAAAAAAAATTGTGAGCGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAA
     |  ||  |||     ||| | ||    | |  |   ||   ||||| |||   |  |       |       |  ||  | ||||| | || |     |    ||||  ||    | | |  ||  ||||||| ||||  |||||  | || |||||||| || || ||||||||||| ||||||||||| |||||||| || ||
-----gtagaagcatt-tttattctcttgc--tagataggcttaattattgttttcccttgatactggttttaggcacattggataatctaat-aagtattgattatctattctttgctttctgttgatgtagGATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254331883|gb|GR846193.1|GR846193
EST:     CTGCTGAATTATATGATTTTGATGATGAGAAG                         GATGAAAACAGATTTGATATNNNNNNNNTTGTGAGCGAGAACTGGATTGAA
genomic: CTGCTGAATTATATGATTTTGATGATGAGAAGgtaaagatga ... ttaaataaagGATGAAAACAGATTTGATATAAAAAAAATTGTGAGCGAGAACTGGATTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtcttatctatttaactgacattggcatattaattaacctttttaaataaagGATGAAAACAGATTTGATATAAAAAAAATTGTGAGCGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAA
                                  aattaac  putative branch site (score: 2)
                                        ccttttt  CT-rich tract
                             atattaattaaccttt  TA-rich tract