1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ttttttaaacatctcatttggatgaggagttgggactacagaaataattggaaattgatcaaccaacaccaacttatctatttagtttaaacttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGTCTCAAAGAAAGGTCGAGGTGCTGGTGGTTTGCAAAATCAACTTGTCAATAGAGCG
species | Glycine max |
transcript | GLYMA13G24090.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCGGCTGCTGG AGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGTCTCAAAEST: gi|31471187|gb|CD413215.1|CD413215
genomic: CTTTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCGGCTGCTGGgtatgttatc ... acttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGTCTCAAA
EST: CTTTCTTGGAAAGAAGCTACCTAAGCAGCATCTACTGCACCGGCTGCTGG AGCCAAACGGCCTGCTAATGCTGCCAATGGGTCCAACTATATTGTCTCAAA
genomic: CTTTCTTGGAAAGAAGCAACAAAAGCAGCATCTACTGCACCGGCTGCTGGgtatgttatc ... acttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGTCTCAAA
aattggaaattgatcaaccaacaccaacttatctatttagtttaaacttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGTCTCAAAGAAAGGTCGAGGTGCTGGTGGTTTGCAAAATCAACTTGTCAATAGAGCG
aattgat putative branch site (score: 4)
cttctgc putative PPT
aacttatctatttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttaaacatctcatttggatgaggagttgggactacagaaataattggaaattgatcaaccaacaccaacttatctatttagtttaaacttctgcagAGCAAAACGGCCTGCTAATGCTGCCAATGGGTCCAACAATATTGTCTCAAAGAAAGGTCGAGGTGCTGGTGGTTTGCAAAATCAACTTGTCAATAGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - tggatga
- - - - - - - - - - - - - - gttggga
- - - - - - - - - - - - - - - - - - - -agaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacacc