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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatgttcttcctggttgattaaaatattgcttgattataaactttgttaatgaaatttcttgtgttgtttgccattccttttccatattgttaatttggtttagtgtgggtttgcagGATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATG

Basic information

species Glycine max
transcript GLYMA13G17610.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 3'ss of exon 12
gtataatgttcttc-ctggttgatt----aaaatattgcttgattataaactttgttaatgaaatttcttgtgttgtttgccatt-----ccttttccatattgttaatttggtttagtgtgg---gtttg-----cagGATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATG
|||| |     ||   | || || |    ||| |  || || ||  ||   ||||| |     ||||  | | |  ||||| ||       | | |   |  ||   |||   | |  ||||     ||||     ||||||| | |||||||| || |||||| |||| |||||||  ||||| ||||| |||||||||||||| |||||||  |||||| | |||||||| |||
gtatgactcatttgatttgtagaatctcaaaagtgatgtttaatccta---tttgtcatattcattttctatttgttttgctatcttagatcatcttggtgctgcacattatatattatgtgatttatttgtcaaccagGATGCTGGAGAAAGTCTGCAAGGATTCACAAATGCTTGCAGACATGTTTGTAAATTATGATTGTGACCTTGAGGGGCCAAACCTTTTTGAACGCATG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G335287_T01 (Zea mays), 3'ss of exon 13
gtataatgttcttcctggttgattaaaatattgcttgattataaactttgttaatgaaatttcttgtgttgtttgccattccttttccatatt-gttaatttggtttagtgtgggtttg---cagGATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATG
||  | | |||||     ||   |  |||      ||  |  | | | ||  ||   |     ||  ||  || |  |   ||  | ||| || |||   |    || |  ||  || |   ||||||||| |||||||| || || ||||| || |||||||  ||  | |||||||| ||||| ||||||||||||| ||||||  | |||||||| | |
gtg-actattcttttccctta--tggaatcccagctgtatgcataatgtgcgaacagacacagtttggtcattcgagacatctggtacatttttgtttgatgttattggactgatttcgaatcagGATGTTGGAGAAAGTTTGCAAAGATCCCCAAATGCTTGCAGATGTGTTTGTGAACTATGACTGTGATCTTGAGGGACCAAATCTTTTTGAACGCACG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 15
lower sequence: AT3G43300.2 (Arabidopsis thaliana), 3'ss of exon 14
gtataatgttcttcctggttgattaaaatattgcttgattataaactttgttaatgaaatttcttgtgttgtttgccattccttttccatattgttaatttggtttagtgtgggttt--gcagGATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATG
||| ||| || |||   | |  |  | || |   ||  || | ||      |  |       |  |||  || |   ||   ||| |  |    || ||      |  | |   | |  |||||||| | |||||||| || || ||||| ||||||||||||||  | | ||| || |||||||||||||| ||||| |||||||||||||| || |||
gtacaatatttttct--gctcgtccagatgtaattttgttttgaatacatctcttagg----caagtga-gtctattatctttttgctgtgaatttcatggatactcatatttttctacgcagGATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATG

upper sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 15
gtataatgttcttcctggttgattaaaatattgcttgattataaactttgttaatgaaatttcttgtgttgtttgccattccttttccatattgttaatttggtttagtgtgggtttgcagGATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATG
                  |  |||| |   |||    ||||   |     ||    | ||||||    ||   |     | |||||||    || |    || || |   ||  ||||||||||| | |||||||| ||||| ||||| ||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||| || |||
-------------aacaatcaattagatccttga--aattaagga----attgtgcagatttctaacattaact--tggttcttttcctctgtgatctcctgattgaacctgattttgcagGATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtttgccattccttttccatattgttaatttggtttagtgtgggtttgcagGATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATG
                          tgttaat  putative branch site (score: 3)
                      atattgttaattt  TA-rich tract