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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtctgctatttaagcatattgattcataatatatcttattactccatcatcttgaatttgattcattggttttttaatttgtttttgtcttcatgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATTCTTGGTCAACCTATGTGCGTACTGCTATATTACCATGACTTAATGAATAGGAAAGGCAAACTTG

Basic information

species Glycine max
transcript GLYMA13G16560.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G16560.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 15
gtacgtctgctatttaagcatattgattcataatatatcttattactcca---tcatcttgaatttgattcattggttttttaatttgtttttgtcttc---atgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATTCTTGGTCAACCTATGTGCGTACTGCTATATTACCATGACTTAATGAATAGGAAAGGCAAACTTG
         |||   ||  | |||      | |  ||||  |  ||| ||     |  || | ||    ||||  |   | |||  |  | || | ||    ||||||||| ||||||||||| || ||| |  | ||||| ||||||||||| || ||||| || || ||||||||||||||||| |||||| | ||||  | |  ||
--------actacccaa-tagatttcagtttcacctatcaaaaaactgcaagtctagtttcagttctcctcatcagagctctaaaatcatattatattttcaatgccagGTGGGAAATATGATCTTCTGGCTGTTTTTCAGCATTCTTGGTCAGCCAATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGAAAAGAGACAACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcatcttgaatttgattcattggttttttaatttgtttttgtcttcatgccagGTTGGAAATATGATTTTTTGGTTCATATTCAGTATTCTTGGTCAACCTATGTGCGTACTGCTATATTACCATGACTTAATGAATAGGAAAGGCAAACTTG
                           ttttaat  putative branch site (score: 3)
                                 tttgtttttgtcttc  CT-rich tract
                    attggttttttaattt  TA-rich tract