1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gcaagtgttgtgaatttatatactttaactaaaaatatcatgtttccattatttgcttcctcttctaagaaatgttttatcaaaaataaaagtcatacacctctacctattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAAAAG
species | Glycine max |
transcript | GLYMA13G08160.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCGCGTATTGATGCAGAG GTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTEST: gi|10843451|gb|BF066749.1|BF066749
genomic: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttg ... tattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGT
EST: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAG GTTGTGAAACTCCTTCGAGAAGCATATGATCGTGTGAAAGCCCTTTTGAAAEST: gi|207799231|gb|GD768230.1|GD768230
genomic: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttg ... tattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAA
EST: NAAAAGTTTAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAG GTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAAEST: gi|26058971|gb|CA801885.1|CA801885
genomic: TAAAAG---AGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttg ... tattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAA
EST: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAG GTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAA
genomic: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttg ... tattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAA
ttctaagaaatgttttatcaaaaataaaagtcatacacctctacctattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAAAAG
cctctacctattct CT-rich tract
aaatgttttatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgttgtgaatttatatactttaactaaaaatatcatgtttccattatttgcttcctcttctaagaaatgttttatcaaaaataaaagtcatacacctctacctattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC