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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagatttgacaattttactatattaattgcatctttgttgctatcttgtaatcatttgaggtgatctaatttgtgttcttgaatacaatgctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCTGACCAAGCTTCAGCTGGAGAGTCACTATGCTCACTACGGTTTGCGTCAA

Basic information

species Glycine max
transcript GLYMA12G34330.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 15
lower sequence: AT4G27180.1 (Arabidopsis thaliana), 3'ss of exon 16
cagatttgacaattttactatattaattgcatctttgttgctatcttgtaatcatttgaggtgatctaatttgtgttcttgaatacaatgctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCTGACCAAGCTTCAGCTGGAGAGTCACTATGCTCACTACGGTTTGCGTCAA
              | |  || | || |     |||      | | |  ||   | || | ||   |||      || | |||| | ||| |     ||||| ||| ||||||||||||| |||||  ||||||||||||||||| | || || |   | ||| | || ||||| || ||||| ||  |||||||  |||
-------------gtaagcatttaaaatcatcgtttaaacagaacctaaaagattctgtgttgtgataa--aactttgtggaattctatgat-----cagCCCTGTTTAGGTGGTGACTCGAAGACGCTAATGTTTGTGAACATCACACCAGAACCTTCCTCAACCGGTGAGTCTCTGTGCTCCCTCAGGTTTGCAGCAA

upper sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 15
---cagatttgacaattttactatattaattgcatctttgttgctatctt-gtaatcatttgaggtgatctaatttgtgttcttgaatacaatgctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCTGACCAAGCTTCAGCTGGAGAGTCACTATGCTCACTACGGTTTGCGTCAA
   |||      |   | ||  || ||| || |   | |     ||| |   | |  || ||   ||   || ||  | |  |  ||||   || | | |  |||||||| ||||||| ||||| ||||| || ||||||||||||||||||||||| |   | |||   |||||||| || ||||| ||||| || ||  | |
tatcagggcc--cctctgtaacatgttactttctattctaacattatttccattacaatctgccttgggttacttattatgttcaaatattttgtttatc--agCCTTGTTTAGGTGGGGACTCCAAGACCTTGATGTTTGTGAACATCTCTCCTGATCCTTCCTCATTGGGAGAGTCGCTTTGCTCCCTACGTTTCGCAGCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193520975|gb|FK482424.1|FK482424
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208152258|gb|GD946115.1|GD946115
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208301565|gb|GE100321.1|GE100321
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACAT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACAT
EST: gi|193341319|gb|FK308799.1|FK308799
EST:     ATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAGAGACATTAATGTTTGTGAACATCTCTCCT
genomic: ATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207720494|gb|GD703133.1|GD703133
EST:     CCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: CCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207761031|gb|GD732352.1|GD732352
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAAGACATTAATGT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAA-GACATTAATGT
EST: gi|208183372|gb|GD987390.1|GD987390
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208329464|gb|GE132554.1|GE132554
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193703461|gb|FK640089.1|FK640089
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACT
EST: gi|193323885|gb|FK290065.1|FK290065
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAA
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAA
EST: gi|207786575|gb|GD756644.1|GD756644
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207842019|gb|GD817207.1|GD817207
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAAACAATCTCTC
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAA-CA-TCTCTC
EST: gi|193420951|gb|FK387514.1|FK387514
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCC
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCC-
EST: gi|193589203|gb|FK542757.1|FK542757
EST:     AACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208251990|gb|GE045149.1|GE045149
EST:     AACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208251990|gb|GE045149.1|GE045149
EST:     AACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208268719|gb|GE067754.1|GE067754
EST:     TCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: TCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193682015|gb|FK624947.1|FK624947
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAA
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAA
EST: gi|208220072|gb|GE016354.1|GE016354
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207841742|gb|GD817154.1|GD817154
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208063092|gb|GD860994.1|GD860994
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207775702|gb|GD749023.1|GD749023
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193354783|gb|FK320376.1|FK320376
EST:     AACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTCGTGAACATCTCTCCT
genomic: AACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208159260|gb|GD955233.1|GD955233
EST:     ATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: ATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208273532|gb|GE069236.1|GE069236
EST:     ATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: ATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208198196|gb|GD996379.1|GD996379
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193486588|gb|FK452619.1|FK452619
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207710171|gb|GD690211.1|GD690211
EST:     GGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAGGACATTAATGTTTGTGAACATCTCTCCT
genomic: GGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208095378|gb|GD896182.1|GD896182
EST:     GGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAGGACATTAATGTTTGTGAACATCTCTCCT
genomic: GGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193394803|gb|FK359984.1|FK359984
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193722118|gb|FK657088.1|FK657088
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193517591|gb|FK475288.1|FK475288
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGCGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208197906|gb|GD998021.1|GD998021
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207788918|gb|GD760266.1|GD760266
EST:     ATCCCATTCAGGAACTTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: ATCCCATTCAGGAAC-TCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207771327|gb|GD746442.1|GD746442
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207789894|gb|GD759575.1|GD759575
EST:     GGAGGATCATATCCCATTCAGGAACTCAAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: GGAGGATCATATCCCATTCAGGAACTCAAA-GCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193321978|gb|FK285694.1|FK285694
EST:     ACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: ACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193409829|gb|FK371271.1|FK371271
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193688021|gb|FK631780.1|FK631780
EST:     CTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: CTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207731987|gb|GD705192.1|GD705192
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193651143|gb|FK598962.1|FK598962
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208092463|gb|GD885524.1|GD885524
EST:     GGAGGATCATATCCCATTCAGGAACTCAAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: GGAGGATCATATCCCATTCAGGAACTC-AAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208089035|gb|GD888172.1|GD888172
EST:     CATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: CATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207800770|gb|GD774641.1|GD774641
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207769372|gb|GD741602.1|GD741602
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|21889374|gb|BQ742587.1|BQ742587
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193609486|gb|FK564364.1|FK564364
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208143420|gb|GD942438.1|GD942438
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208254675|gb|GE057353.1|GE057353
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207760000|gb|GD730831.1|GD730831
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207783003|gb|GD751004.1|GD751004
EST:     GCTTACATACCTTCTTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCC
genomic: GCTTACATACCTTC-TTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCC
EST: gi|208089101|gb|GD886992.1|GD886992
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193684738|gb|FK622290.1|FK622290
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGT
EST: gi|208108893|gb|GD907605.1|GD907605
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208175309|gb|GD976396.1|GD976396
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTAACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208328988|gb|GE126702.1|GE126702
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAATGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208189559|gb|GD990487.1|GD990487
EST:     GAGGATCATATACCCAATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: GAGGATCATAT-CCC-ATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193422136|gb|FK387145.1|FK387145
EST:     AGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208272516|gb|GE067002.1|GE067002
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193558058|gb|FK514079.1|FK514079
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGT
EST: gi|207758194|gb|GD726364.1|GD726364
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGAACTACAAAAGACATTAATGT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGA-CT-CAAA-GACATTAATGT
EST: gi|207791299|gb|GD760938.1|GD760938
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTCTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208294483|gb|GE091726.1|GE091726
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|208167796|gb|GD963866.1|GD963866
EST:     AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: AGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|207712423|gb|GD693831.1|GD693831
EST:     TTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: TTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
EST: gi|193403886|gb|FK366136.1|FK366136
EST:     GGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAG                         CCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT
genomic: GGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTCTTCAGgtgattatat ... ctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaatcatttgaggtgatctaatttgtgttcttgaatacaatgctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCTGACCAAGCTTCAGCTGGAGAGTCACTATGCTCACTACGGTTTGCGTCAA
                  atctaat  putative branch site (score: 3)
                  atctaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagatttgacaattttactatattaattgcatctttgttgctatcttgtaatcatttgaggtgatctaatttgtgttcttgaatacaatgctgaacacagCCTTGTCTAGGTGGTGACTCAAAGACATTAATGTTTGTGAACATCTCTCCTGACCAAGCTTCAGCTGGAGAGTCACTATGCTCACTACGGTTTGCGTCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - -tgcatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc