Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaatcccttatttatttcatagttgaaatgcattttttcctagatatcttacaagaggtgctttattttcagGACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCACAGTCAACCACCAGACTCTGAATTACAGAATCAGATATGGACAATATTT

Basic information

species Glycine max
transcript GLYMA12G30520.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 15
-------------gtaaggaatcccttatttatttcatagttgaaatgcattttttcctagatatcttacaagaggtgctttattttcagGACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCACAGTCAACCACCAGACTCTGAATTACAGAATCAGATATGGACAATATTT
             |    | |||  || | | |||| ||   |   |||  ||    |     |||||| || |  |  | || |||||||||||||||  || |||||||| | |||||||||||||| ||| ||||||||| ||||||  ||||| | ||| ||||||||||||| ||| ||||||| 
gtaagagctcttagccttgcatctgttgtct-tttcttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5058266|gb|AI736742.1|AI736742
EST:     CTATTTAGCATTATACATGAGAAGCTTCCTACTGTATC                         GACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCA
genomic: CTATTTAGCATTATACATGAGAAGCTTCCTACTGTATCgtaaggaatc ... ttattttcagGACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagttgaaatgcattttttcctagatatcttacaagaggtgctttattttcagGACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCACAGTCAACCACCAGACTCTGAATTACAGAATCAGATATGGACAATATTT
                            atcttac  putative branch site (score: 3)
                                           ctttattttc  putative PPT
                                            tttattttca  TA-rich tract