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...ttagctgatttgttatcttaagtggatgaaatgaaacttaaaggtataagatgttaaactgggggttgggctgtgcgtttttccttgacaatatctttacGTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAAAACTTCCATTCAAATTACATGGACTTGCTGTTAGGTCAACCTTCCATCC
species | Glycine max |
transcript | GLYMA12G28910.1 |
intron # | 15 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TGTAGAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAG GTGAATCAAGAGCAGTTCTGATACACCAGTTATCCEST: gi|6951596|gb|AW423664.1|AW423664
genomic: TGTAGAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAGatatcctttg ... atatctttacGTGAATCAAGAGCAGTTCTGATACACCAGTTATCC
EST: TGTAAAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAG GTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAAEST: gi|58016136|gb|CX702878.1|CX702878
genomic: TGTAGAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAGatatcctttg ... atatctttacGTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAA
EST: TGTAGAATGGCACCGAAAAGGTGACTACTTTTCGACAGTGATGCCGGCAG GTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAAEST: gi|58015214|gb|CX701956.1|CX701956
genomic: TGTAGAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAGatatcctttg ... atatctttacGTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAA
EST: TGTAGAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAG GTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAA
genomic: TGTAGAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAGatatcctttg ... atatctttacGTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAA
ataagatgttaaactgggggttgggctgtgcgtttttccttgacaatatctttacGTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAAAACTTCCATTCAAATTACATGGACTTGCTGTTAGGTCAACCTTCCATCC
ttccttgac putative branch site
tatcttt putative PPT
aatatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagctgatttgttatcttaagtggatgaaatgaaacttaaaggtataagatgttaaactgggggttgggctgtgcgtttttccttgacaatatctttacGTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAAAACTTCCATTCAAATTACATGGACTTGCTGTTAGGTCAACCTTCCATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -gctgatt
- - - - - - - - - - -gtggatg
- - - - - - - - - - - - - - aaatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgg