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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttaatgctctgattttttttttttaaattcatatttcaaacctggttagttattgttgctcttcaatgcatttatttattaagaattttattgtcacacagTCTAGCAGCAGCTATGCTTCTTTTGAAGATGTTTCTACTAGCGGAACTGTTGTTGTTTTGCATAGCCAGCATGACGATTCTGATTCTCCACAGACACCAA

Basic information

species Glycine max
transcript GLYMA12G27300.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789393|gb|BG651984.1|BG651984
EST:     GATCTCCAAAAGGACCACAGCCATCAATGTTTCGTGACCAAAGTTCCCAG                         TCTAGCAGCAGCTATGCTTCTTTTGAAGATGTTTCTACTAGCGGAACTGTT
genomic: GATCTCCAAAAGGACCACAGCCATCAATGTTTCGTGACCAAAGTTCCCAGgtatttttaa ... tgtcacacagTCTAGCAGCAGCTATGCTTCTTTTGAAGATGTTTCTACTAGCGGAACTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttattgttgctcttcaatgcatttatttattaagaattttattgtcacacagTCTAGCAGCAGCTATGCTTCTTTTGAAGATGTTTCTACTAGCGGAACTGTTGTTGTTTTGCATAGCCAGCATGACGATTCTGATTCTCCACAGACACCAA
                                       ttttatt  CT-rich tract
               ttcaatgcatttattt  TA-rich tract