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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgacttgtatcgatactgtataatttcatactagaatgcaactccaggtcttctgtataaatttttcctctattccagGTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAAACATTTG

Basic information

species Glycine max
transcript GLYMA12G04820.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04820.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 15
gtaatgacttgtatcgatactgtataatttcatactag--aatgcaactccaggtcttctgtataaatttttc---ctctattccagGTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAAACATTTG
||||||||   | | || || |    | |||||  |     |    ||||  |   | |  | ||| ||||     ||   |  ||||| | ||| || |||||||| || || ||||| || ||||| ||||| |   | ||||| || ||||||||||||||||||||||| || ||||||||||
gtaatgaccaatttaga-acagctgcacttcatgttttctgaccttactcgggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18041035|gb|BM309329.1|BM309329
EST:     TGTTTCAATACAACTGCACAAACACGATACCAGAGCAATTATTGGAAGAT                         GTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTC
genomic: TGTTTCAATACAACTGCACAAACACGATACCAGAGCAATTATTGGAAGATgtaatgactt ... tctattccagGTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTC
EST: gi|298193333|gb|HO033767.1|HO033767
EST:     TGTTTCAATACAACTGCACAAACACGATACCAGAGCAATTATTGGAAGAT                         GTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTC
genomic: TGTTTCAATACAACTGCACAAACACGATACCAGAGCAATTATTGGAAGATgtaatgactt ... tctattccagGTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTC
EST: gi|33390701|gb|CA853896.1|CA853896
EST:     TGTTTCAATACAACTGCACAAACACGATACCAGAGCAATTATTGGAAGAT                         GTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTC
genomic: TGTTTCAATACAACTGCACAAACACGATACCAGAGCAATTATTGGAAGATgtaatgactt ... tctattccagGTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatactagaatgcaactccaggtcttctgtataaatttttcctctattccagGTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAAACATTTG
                                      tttttcctctattcc  CT-rich tract
                           ttctgtataaattttt  TA-rich tract